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Protein Overview: FBpp0293061

General Information:
Name(s) found: FBpp0293061 [FlyBase]
Description(s) found:
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  • gi|7297695|gb|AAF52947.1| small ribonucleoprotein particle protein B [Drosophila melanogaster] [NCBI NR]
  • pir||JN0574 snRNP protein B - fruit fly (Drosophila melanogaster) [NCBI NR]
  • gi|290272|gb|AAA28858.1| ribonucleoprotein [NCBI NR]
  • gi|17136806|ref|NP_476921.1| small ribonucleoprotein particle protein B [Drosophila melanogaster] [NCBI NR]
  • gi|16769000|gb|AAL28719.1| LD14049p [Drosophila melanogaster] [NCBI NR]
  • gi|10720262|sp|Q05856.1|RSMB_DROME RecName: Full=Small nuclear ribonucleoprotein-associated protein B; Short=snRNP-B; Short=Sm protein B; Short=Sm-B; Short=SmB [NCBI NR]
  • Small nuclear ribonucleoprotein-associated protein B OS=Drosophila melanogaster GN=SmB PE=1 SV=1 [Swiss-Prot]
  • type=protein; loc=2L:complement(10425528..10426124,10426494..10426496); ID=FBpp0293061; name=SmB-PB; parent=FBgn0262601,FBtr0304118; dbxref=FlyBase:FBpp0293061,FlyBase_Annotation_IDs:CG5352-PB,REFSEQ:NP_001188780,GB_protein:ADV37030; MD5=61f4e1aaf8cf50d82e671a0638546550; length=199; release=r5.56; species=Dmel; [FlyBase]
  • The gene Small ribonucleoprotein particle protein B is referred to in FlyBase by the symbol Dmel\SmB (CG5352, FBgn0010083). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2L:10425483..10426791. It has the cytological map location 31E1. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process</span>: mitotic spindle organization. 4 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG5352-PA translation from_gene[CG5352 SmB FBgn0010083] seq_release:3 mol_weight=21021 cds_boundaries:(2L:10,417,940..10,418,905[-]) aa_length:199 transcript_info:[CG5352-RA seq_release:3] gene_info:[gene symbol:SmB FBgn0010083 gene_boundaries:(2L:10, [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q05856) Small nuclear ribonucleoprotein associated protein B (snRNP-B) (Sm protein B) (Sm-B) (SmB) [DrosMelano7227.FASTAC.txt]
  • (AE003628) SmB gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG5352-PA [Drosophila melanogaster]gi|16769000|gb|AAL28719.1| LD14049p [Drosophila melanogaster]gi|17136806|ref|NP_476921.1| CG5352-PA [Drosophila melanogaster]gi|419963|pir||JN0574 snRNP protein B - fruit fly (Drosophila melanogaster)gi|10720262|sp|Q [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2L:complement(10425528..10426124,10426494..10426496); ID=FBpp0079635; name=SmB-PA; parent=FBgn0010083,FBtr0080045; dbxref=GB_protein:AAF52947.1,FlyBase:FBpp0079635,FlyBase_Annotation_IDs:CG5352-PA,REFSEQ:NP_476921,GB_protein:AAF52947; MD [fly-100309-contam.fasta]
  • CG5352-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • ribonucleoprotein [nr-271106-contam.fasta]
  • LD14049p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • Small nuclear ribonucleoprotein-associated protein B (snRNP-B) (Sm protein B) (Sm-B) (SmB) [nr-271106-contam.fasta]
  • Small ribonucleoprotein particle protein B CG5352-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2L:complement(10425528..10426124,10426494..10426496); ID=FBpp0079635; name=SmB-PA; parent=FBgn0010083,FBtr0080045; dbxref=GB_protein:AAF52947.1,FlyBase:FBpp0079635,FlyBase_Annotation_IDs:CG5352-PA,REFSEQ:NP_476921,GB_protein:AAF52947; MD5=61f4e1aaf8cf50d82e671a0638546550; length=199; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2L:complement(10425528..10426124,10426494..10426496); ID=FBpp0079635; name=SmB-PA; parent=FBgn0010083,FBtr0080045; dbxref=GB_protein:AAF52947.1,FlyBase:FBpp0079635,FlyBase_Annotation_IDs:CG5352-PA,REFSEQ:NP_476921,GB_protein:AAF52947; MD5=61f4e1aaf8cf50d82e671a0638546550; length=199; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • type=protein; loc=2L:complement(10425528..10426124,10426494..10426496); ID=FBpp0293061; name=SmB-PB; parent=FBgn0262601,FBtr0304118; dbxref=FlyBase:FBpp0293061,FlyBase_Annotation_IDs:CG5352-PB,REFSEQ:NP_001188780,GB_protein:ADV37030; MD5=61f4e1aaf8cf50d82e671a0638546550; length=199; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2L:complement(join(10426494..10426496,10425528..10426124)); ID=FBpp0293061; name=SmB-PB; parent=FBgn0262601,FBtr0304118; dbxref=FlyBase:FBpp0293061,FlyBase_Annotation_IDs:CG5352-PB,REFSEQ:NP_001188780,GB_protein:ADV37030; MD5=61f4e1aaf8cf50d82e671a0638546550; length=199; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2L:complement(join(10426494..10426496,10425528..10426124)); ID=FBpp0293061; name=SmB-PB; parent=FBgn0262601,FBtr0304118; dbxref=FlyBase:FBpp0293061,FlyBase_Annotation_IDs:CG5352-PB,REFSEQ:NP_001188780,GB_protein:ADV37030; MD5=61f4e1aaf8cf50d82e671a0638546550; length=199; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • FBpp0293061 type=protein; loc=2L:complement(join(10426494..10426496,10425528..10426124)); ID=FBpp0293061; name=SmB-PB; parent=FBgn0262601,FBtr0304118; dbxref=FlyBase:FBpp0293061,FlyBase_Annotation_IDs:CG5352-PB,REFSEQ:NP_001188780,GB_protein:ADV37030; MD5=61f4e1aaf8cf50d82e671a0638546550; length=199; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2L:complement(join(10426494..10426496,10425528..10426124)); ID=FBpp0293061; name=SmB-PB; parent=FBgn0262601,FBtr0304118; dbxref=FlyBase:FBpp0293061,FlyBase_Annotation_IDs:CG5352-PB,REFSEQ:NP_001188780,GB_protein:ADV37030,UniProt/Swiss-Prot:Q05856; MD5=61f4e1aaf8cf50d82e671a0638546550; length=199; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 199 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA][NAS]
    catalytic step 2 spliceosome [IDA]
    precatalytic spliceosome [IDA]
    spliceosomal complex [ISS]
    small nuclear ribonucleoprotein complex [ISS][NAS]
    Biological Process: RNA metabolic process [NAS]
    mitotic spindle organization [IMP]
    nuclear mRNA splicing, via spliceosome [IC][ISS]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIGKNNKMI QHLNYRVRIV LQDSRTFIGT FKAFDKHMNL ILGDCEEFRK IRSKNSKVPE  60
   61 REEKRVLGFV LLRGENIVSL TVEGPPPPEE GLPRVPIPGA APGPGIGRVA GRGMPINLSA 120
  121 VPAGLQGPVR GVGGPAQQHM APMGRGVPRA PMMGAPPPGM IPGGMPSMPG NMGRGAPPPM 180
  181 RGPPPSMIRG APPPGRGGY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..95] PSI-BLAST 32.0 B core SNRNP protein
    2 View Details [96..199] FFAS03 1.28 Crystal Structure of Rat Synapsin I C Domain Complexed to Ca.ATP

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
    		• 9.36615441177233 bayes_pls_golite062009
  • RNA binding
    		•  5.81718051012035 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.69031444148163 bayes_pls_golite062009
  • mRNA binding
    		•  2.57166143288861 bayes_pls_golite062009
  • binding
    		•  2.04681172391952 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.92

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle