YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0293061
Organism:	Drosophila melanogaster
Length:	199 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0293061.

Description	E-value	Query Range	Subject Range
gi\|194859949, gi... - gi\|194859949\|ref\|XP_001969485.1\| GG23931 [Drosophila erecta], gi\|190661352\|gb\|EDV58544.1\| GG23931 [D... gi\|38048415, gi\|... - gi\|38048415\|gb\|AAR10110.1\| similar to Drosophila melanogaster SmB [Drosophila yakuba], gi\|195473671\|...	210.0	[0..1]	[199..1]
gi\|125986804, gi... - gi\|54645493\|gb\|EAL34232.1\| GA18820-PA [Drosophila pseudoobscura], gi\|125986804\|ref\|XP_001357165.1\| G...	203.0	[0..2]	[199..2]
gi\|112305, gi\|206694 - gi\|206694\|gb\|AAA42059.1\| snRNP-associated polypeptide N, pir\|\|A35448 small nuclear ribonucleoprotein...	193.0	[0..1]	[176..1]
RSMB_MACEU - Small nuclear ribonucleoprotein-associated protein B' OS=Macropus eugenii GN=SNRPB PE=2 SV=1	190.0	[0..1]	[148..1]
RSMN_BOVIN - Small nuclear ribonucleoprotein-associated protein N OS=Bos taurus GN=SNRPN PE=2 SV=1	188.0	[0..1]	[176..1]
gi\|114656016 - gi\|114656016\|ref\|XP_523182.2\| PREDICTED: hypothetical protein [Pan troglodytes]	181.0	[0..1]	[176..38]
gi\|50540540, gi\|... - gi\|8099650\|gb\|AAF72188.1\| snRNP-associated protein; SmB [Danio rerio], gi\|50540540\|ref\|NP_991230.1\| ...	181.0	[0..1]	[161..1]
gi\|83318209, gi\|... - gi\|83318209\|gb\|AAI08498.1\| MGC130840 protein [Xenopus laevis], gi\|147901727\|ref\|NP_001089822.1\| hypo...	179.0	[0..1]	[174..1]
gi\|57045593, gi\|... - gi\|73950980\|ref\|XP_848476.1\| PREDICTED: similar to small nuclear ribonucleoparticle-associated prote... gi\|149691049 - gi\|149691049\|ref\|XP_001492752.1\| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide N...	178.0	[0..1]	[176..1]

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Predicted Domain #1

Region A:
Residues: [1-95]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIGKNNKMI QHLNYRVRIV LQDSRTFIGT FKAFDKHMNL ILGDCEEFRK IRSKNSKVPE  60
   61 REEKRVLGFV LLRGENIVSL TVEGPPPPEE GLPRV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.0
Match:	1d3bB
Description:	B core SNRNP protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
	9.36615441177233	bayes_pls_golite062009
RNA binding	5.81718051012035	bayes_pls_golite062009
nucleic acid binding	2.69031444148163	bayes_pls_golite062009
mRNA binding	2.57166143288861	bayes_pls_golite062009
binding	2.04681172391952	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [96-199]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PIPGAAPGPG IGRVAGRGMP INLSAVPAGL QGPVRGVGGP AQQHMAPMGR GVPRAPMMGA  60
   61 PPPGMIPGGM PSMPGNMGRG APPPMRGPPP SMIRGAPPPG RGGY

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.28
Match:	1pk8A
Description:	Crystal Structure of Rat Synapsin I C Domain Complexed to Ca.ATP
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: