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Protein Overview: FABPI_RAT

General Information:
Name(s) found: FABPI_RAT [Swiss-Prot]
Description(s) found:
Found 23 descriptions.
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  • Fatty acid-binding protein, intestinal OS=Rattus norvegicus GN=Fabp2 PE=1 SV=4 [Swiss-Prot]
    • Organism: Rattus norvegicus
    Length: 132 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDA]
    microvillus [IDA]
    apical cortex [IDA]
    intracellular part [UNKNOWN]
    plasma membrane [IDA]
    Biological Process: intestinal absorption [IDA]
    long-chain fatty acid transport [IDA]
    fatty acid transport [IEP]
    transport [IEA]
    fatty acid metabolic process [IDA]
    Molecular Function: fatty acid binding [IDA][IPI][TAS]
    transporter activity [IEA]
    long-chain fatty acid transporter activity [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFDGTWKVD RNENYEKFME KMGINVVKRK LGAHDNLKLT ITQEGNKFTV KESSNFRNID  60
   61 VVFELGVDFA YSLADGTELT GTWTMEGNKL VGKFKRVDNG KELIAVREIS GNELIQTYTY 120
  121 EGVEAKRIFK KE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..132] PSI-BLAST 33.522879 REFINEMENT OF THE STRUCTURE OF RECOMBINANT RAT INTESTINAL FATTY ACID-BINDING APOPROTEIN AT 1.2 ANGSTROMS RESOLUTION

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • long-chain fatty acid transporter activity
    		•  5.31242454679135 bayes_pls_golite062009
  • fatty acid transporter activity
    		•  5.05947161650978 bayes_pls_golite062009
  • lipid transporter activity
    		•  4.30505384117861 bayes_pls_golite062009
  • retinoid binding
    		•  3.86745158299736 bayes_pls_golite062009
  • isoprenoid binding
    		•  3.80802424204178 bayes_pls_golite062009
  • lysophospholipid transporter activity
    		•  3.53484598441971 bayes_pls_golite062009
  • retinol binding
    		•  3.41359399354212 bayes_pls_golite062009
  • binding
    		•  2.93830472620404 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.27413749831465 bayes_pls_golite062009
  • transporter activity
    		•  2.15627660314839 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.45696778890481 bayes_pls_golite062009
  • protein binding
    		•  1.23450129884619 bayes_pls_golite062009
  • prostaglandin-D synthase activity
    		•  1.18764036773412 bayes_pls_golite062009
  • lipid binding
    		•  1.0002255159651 bayes_pls_golite062009
  • retinol transporter activity
    		•  0.811095267558536 bayes_pls_golite062009
  • fatty acid binding
    		•  0.761923641769607 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.670647472301401 bayes_pls_golite062009
  • retinoic acid binding
    		•  0.539496110498594 bayes_pls_golite062009
  • bile acid binding
    		•  0.37501307074598 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle