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Protein Overview: YJVE_SCHPO

General Information:
Name(s) found: YJVE_SCHPO [Swiss-Prot]
Description(s) found:
Found 2 descriptions.
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  • KH domain-containing protein C550.14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC550.14 PE=1 SV=1 [Swiss-Prot]
    • Organism: Schizosaccharomyces pombe 972h-
    Length: 1279 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSYDFQKLT NDENLQGTES QVPSGSKSAS TNGLLSAASS AAGSSFGLTP SAILQQKHEN  60
   61 AQQGKKQNNS KSFSKKPAID VHSEDAFPTL LSKTGPSKPR IVSWVRKTAS NTSVAGSDSV 120
  121 SRDKIPFSAS SRASSTKSTL SSVKETDFVT ETLILSPDNQ APRMSFVGKP NSVAEIVRTV 180
  181 MHQTSTRINV STASKTKNTT FLIQGKTSAV KAARRQILKL IGRRETKTMP CPVFVVGAII 240
  241 GTNGQNLKSI MDRTSTRIQI PKRNNTANES SDDAKKPEKE ENSAASTLDD LEPQYEMTTI 300
  301 TIEGDFEGVE LAQKDIEAII NERTSNTTVR ISHISTELYS LLRGPDGKNI KELEEGRDLK 360
  361 VQIPFAYLDP SAPVNPIVLS GEKSAVRECA LYLQGQAEEL LRTTIPTMLP IPRRQHRFIN 420
  421 GEKGVGIQDI LRKSGCSVIL PPINGDSDVV SVRGPALNIS EGIRLTLERA NSTIVDAVNI 480
  481 TTAYASSKNP FDIASIVARL FLRSRKLIPL EEECAVQYHL PKREELQSNS NKTVIIEISG 540
  541 KSQEAVREGR AKLLALVNQF PESKFYKVTI DPLLQRYVIG SKGKNLQKLR NEHQVELLVG 600
  601 EYGEEDPDVI VCYIGADDGK SPDQIQKELA DLAESVKSSA EASAKIVSEI IQVPSVYHKH 660
  661 IVGPKGTTLN AIIGKSEENV IVQLGKVSYR PDSTDDDVYI RGFSKDVERV VSEIKQVVRD 720
  721 AKNHEILHSH VEEFDFPAQY SKNVIGKNGS NVSSLREDLG VQINVEEGHI RIQGIKKNVE 780
  781 ETAARIKSQI EALIDDTILR VNIPNDFHRQ LIGSNGKYVR RLEEKFSVRV RFPREDDSSN 840
  841 STGNELMKPT SPDEVVIRGG KKSVAAAKQE LLELYEYEKS IAYTSTIDIP SKAVSRVVGR 900
  901 NGSTVENIRT QFDVKIDIGD VSTEETTPVS VRGAKADVEN AIKEISAIAE EVKNLVEKVI 960
  961 KIDREYHRYL IGPNGSKLQN TIKECGGSTD KTETARLISF SNGNSEEERN SVVLRGDKEI1020
 1021 VEALETRLLE IVEELKNQVE EKIEVPQRCI SSIIGRMGST RRDIERKTST MLNIPNVLDP1080
 1081 EETVTITIVG SPENCEKAKE MIQEKVASQY TQMITVPDTV YESIMKGILM KKLRSDLKVF1140
 1141 VDTPEIKPVQ PTEVVLEDHE DGVFPWKLVT HDYTGSSSSE WAVRGHKENV EKAIASLEKS1200
 1201 IKQVMENCIA YLGIPTNLHR RIIGSGGSII NKIRKIAQVK IDVPRTPGDE IVVVQGSRAG1260
 1261 VVKAKDLIFE RLQENQNQE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..145] deduced N/A No confident structure predictions are available.
    2 View Details [146..400] PSI-BLAST 20.0 No description for 2annA was found.
    3 View Details [401..652] FFAS03 4.5 No description for 2annA was found.
    4 View Details [653..725] PSI-BLAST 3.30103 Structural genomics, 1.5A crystal structure of a hypothetical protein APE0754 from Aeropyrum pernix
    5 View Details [726..1279] PSI-BLAST 66.221849 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • nucleic acid binding
    		•  4.78650555542715 bayes_pls_golite062009
  • RNA binding
    		•  4.53756130039297 bayes_pls_golite062009
  • binding
    		•  3.45962790790935 bayes_pls_golite062009
  • mRNA binding
    		•  2.96669269799942 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.54125642939085 bayes_pls_golite062009
  • protein binding
    		•  2.21586499514642 bayes_pls_golite062009
  • DNA binding
    		•  2.21410605855315 bayes_pls_golite062009
  • transcription repressor activity
    		•  2.05847856402521 bayes_pls_golite062009
  • satellite DNA binding
    		•  1.7928748433953 bayes_pls_golite062009
  • transcription activator activity
    		•  1.48296178355139 bayes_pls_golite062009
  • transcription factor activity
    		•  1.22994056525688 bayes_pls_golite062009
  • mRNA 3'-UTR binding
    		•  0.722090816226222 bayes_pls_golite062009
  • transcription factor binding
    		•  0.274119533759015 bayes_pls_golite062009
  • signal transducer activity
    		•  0.158470089017993 bayes_pls_golite062009
  • molecular transducer activity
    		•  0.158470089017993 bayes_pls_golite062009
  • catalytic activity
    		•  0.113112541746059 bayes_pls_golite062009
    		• 0.0350881281129536 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.0321875054165348 bayes_pls_golite062009
    5
    Term Confidence Notes
  • structural constituent of ribosome
    		•  4.9869754621766 bayes_pls_golite062009
  • structural molecule activity
    		•  4.395910578613 bayes_pls_golite062009
  • deacetylase activity
    		•  2.97103147426401 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.31170537288595 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.15869371949817 bayes_pls_golite062009
  • DNA binding
    		•  1.83419041185531 bayes_pls_golite062009
  • transcription termination factor activity
    		•  1.53584399356788 bayes_pls_golite062009
  • binding
    		•  1.50032731466041 bayes_pls_golite062009
  • RNA binding
    		•  1.40868766468494 bayes_pls_golite062009
  • protein binding
    		•  1.24158964059466 bayes_pls_golite062009
  • transcription activator activity
    		•  1.00010418622757 bayes_pls_golite062009
  • hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides
    		•  0.98826050239529 bayes_pls_golite062009
  • catalytic activity
    		•  0.878454819018611 bayes_pls_golite062009
  • ribonuclease activity
    		•  0.825588323751637 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.499351238958464 bayes_pls_golite062009
  • ATPase activity
    		•  0.368110506118156 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  0.337324481645901 bayes_pls_golite062009
  • 3'-5'-exoribonuclease activity
    		•  0.33153657862266 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.31569932728929 bayes_pls_golite062009
  • mRNA binding
    		•  0.31094301077659 bayes_pls_golite062009
  • nuclease activity
    		•  0.29999921376873 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  0.256048137250105 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.237784820115582 bayes_pls_golite062009
  • kinase activity
    		•  0.237670019875888 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.235837031080758 bayes_pls_golite062009
  • hydrolase activity
    		•  0.225144534202002 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
    		•  0.21915720954962 bayes_pls_golite062009
  • exoribonuclease activity
    		•  0.20391251413344 bayes_pls_golite062009
  • ATPase activity, coupled
    		•  0.0992081031610161 bayes_pls_golite062009
  • transcription factor binding
    		•  0.0761113004281331 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.78

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle