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Protein Overview: YLA3_SCHPO

General Information:
Name(s) found: YLA3_SCHPO [Swiss-Prot]
Description(s) found:
Found 2 descriptions.
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  • Uncharacterized HTH La-type RNA-binding protein C1527.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1527.03 PE=1 SV=1 [Swiss-Prot]
    • Organism: Schizosaccharomyces pombe 972h-
    Length: 475 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHKEPSAAE TSTVVHSEED KAFCIGTGAV ISEEREKEVL KNLQNSLTGK TAEENLNDEA  60
   61 NHTSSDKSKS EDYQPSNVNV WALRKEKMIP KKHSHVKQEK RFSKSLQLQD PNVWPSPEIA 120
  121 EKQVEDRKLS DDSQKPLAPK ANGKEKWVTI TPNFTHTPIS NRKSSRSRND GSRRNGNGRR 180
  181 RGNYSSHGSN KRQTNYSREK DASRSIDSSN PSAEYRDDIN NTFGSQTVSS ANGKEVPQTS 240
  241 EDSSSQAPHH SSSSGHAPSQ QGGNKHSYKK SDSQQSFHHK GRNTRKGQRH NNGFYRNIAN 300
  301 NIQGPFPNYP VVVNGNGVNP YLCDVQAFLT SQLEYYFSIE NLCKDMFLRK HMDDEGYVPL 360
  361 AFLASFNRIK SFSTDLNLLH AACKASDIID VAIDLQSPMS IKVRRKETWS PWILPSESRL 420
  421 KFEMAKYPQI NSSSSMSPLA SSISNLTISP PFIPSSVDSI IKRDVQTEVE DKLTV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..94] deduced N/A No confident structure predictions are available.
    2 View Details [95..233] MSA 1.179994 View MSA. No confident structure predictions are available.
    3 View Details [234..316] deduced N/A No confident structure predictions are available.
    4 View Details [317..475] PSI-BLAST 32.0 Structural basis for recognition of UUUOH 3'-terminii of nascent RNA pol III transcripts by La autoantigen

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • transcription regulator activity
    		•  3.16805061653531 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.10560219735181 bayes_pls_golite062009
  • DNA binding
    		•  2.97348943886804 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  2.95301685898669 bayes_pls_golite062009
  • structural molecule activity
    		•  2.70976099158766 bayes_pls_golite062009
  • binding
    		•  2.29601364076827 bayes_pls_golite062009
  • transcription factor activity
    		•  2.27922300995509 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.93130370844712 bayes_pls_golite062009
  • transcription activator activity
    		•  0.782193398686323 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.67795138236883 bayes_pls_golite062009
  • RNA binding
    		•  0.345456982950223 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.10854873707001 bayes_pls_golite062009
  • protein binding
    		•  0.057263185425224 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle