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Protein Overview: SMARCE1

General Information:
Name(s) found: SMARCE1 [HGNC (HUGO)]
Description(s) found:
Found 38 descriptions.
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  • SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 [HGNC (HUGO)]
    • Organism: Homo sapiens
    Length: 411 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKRPSYAPP PTPAPATQMP STPGFVGYNP YSHLAYNNYR LGGNPGTNSR VTASSGITIP  60
   61 KPPKPPDKPL MPYMRYSRKV WDQVKASNPD LKLWEIGKII GGMWRDLTDE EKQEYLNEYE 120
  121 AEKIEYNESM KAYHNSPAYL AYINAKSRAE AALEEESRQR QSRMEKGEPY MSIQPAEDPD 180
  181 DYDDGFSMKH TATARFQRNH RLISEILSES VVPDVRSVVT TARMQVLKRQ VQSLMVHQRK 240
  241 LEAELLQIEE RHQEKKRKFL ESTDSFNNEL KRLCGLKVEV DMEKIAAEIA QAEEQARKRQ 300
  301 EEREKEAAEQ AERSQSSIVP EEEQAANKGE EKKDDENIPM ETEETHLEET TESQQNGEEG 360
  361 TSTPEDKESG QEGVDSMAEE GTSDSNTGSE SNSATVEEPP TDPIPEDEKK E

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run MIS12 No Comments Cheeseman, I.M., et al. (2004)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..107] FFAS03 3.66 Solution structure of the 4th HMG-box of mouse UBF1
    2 View Details [108..411] PSI-BLAST 4.69897 Heavy meromyosin subfragment

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • DNA binding
    		•  4.84246149108405 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.73451137188048 bayes_pls_golite062009
  • transcription regulator activity
    		•  4.70526716815828 bayes_pls_golite062009
  • transcription factor activity
    		•  3.57291699480776 bayes_pls_golite062009
  • binding
    		•  3.45976454780353 bayes_pls_golite062009
  • transcription repressor activity
    		•  2.98484462586223 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  2.64790748689391 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  2.54168984559574 bayes_pls_golite062009
  • transcription activator activity
    		•  1.46271038594364 bayes_pls_golite062009
  • chromatin binding
    		•  1.42879477692352 bayes_pls_golite062009
  • protein binding
    		•  1.06660874927515 bayes_pls_golite062009
  • transcription factor binding
    		•  0.97374076531363 bayes_pls_golite062009
  • DNA bending activity
    		•  0.428738547626155 bayes_pls_golite062009
  • specific transcriptional repressor activity
    		•  0.227668272391718 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity, enhancer binding
    		•  0.0671309267769598 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle