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Protein Overview: gi|119574692, gi...

General Information:
Name(s) found: gi|51476855 [NCBI NR]
gi|189054973 [NCBI NR]
gi|119574692 [NCBI NR]
Description(s) found:
Found 22 descriptions.
SHOW ALL
  • gi|51476855|emb|CAH18395.1| hypothetical protein [Homo sapiens] [NCBI NR]
  • gi|189054973|dbj|BAG37957.1| unnamed protein product [Homo sapiens] [NCBI NR]
  • gi|119574692|gb|EAW54307.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_c [Homo sapiens] [NCBI NR]
    • Organism: Homo sapiens
    Length: 715 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSPKSKKAK KKEEPSQNDI SPKTKSLRKK KEPIEKKVVS SKTKKVTKNE EPSEEEIDAP  60
   61 KPKKMKKEKE MNGETREKSP KLKNGFPHPE PDCNPSEAAS EESNSEIEQE IPVEQKEGAF 120
  121 SNFPISEETI KLLKGRGVTF LFPIQAKTFH HVYSGKDLIA QARTGTGKTF SFAIPLIEKL 180
  181 HGELQDRKRG RAPQVLVLAP TRELANQVSK DFSDITKKLS VACFYGGTPY GGQFERMRNG 240
  241 IDILVGTPGR IKDHIQNGKL DLTKLKHVVL DEVDQMLDMG FADQVEEILS VAYKKDSEDN 300
  301 PQTLLFSATC PHWVFNVAKK YMKSTYEQVD LIGKKTQKTA ITVEHLAIKC HWTQRAAVIG 360
  361 DVIRVYSGHQ GRTIIFCETK KEAQELSQNS AIKQDAQSLH GDIPQKQREI TLKGFRNGSF 420
  421 GVLVATNVAA RGLDIPEVDL VIQSSPPKDV ESYIHRSGRT GRAGRTGVCI CFYQHKEEYQ 480
  481 LVQVEQKAGI KFKRIGVPSA TEIIKASSKD AIRLLDSVPP TAISHFKQSA EKLIEEKGAV 540
  541 EALAAALAHI SGATSVDQRS LINSNVGFVT MILQCSIEMP NISYAWKELK EQLGEEIDSK 600
  601 VKGMVFLKGK LGVCFDVPTA SVTEIQEKWH DSRRWQLSVA TEQPELEGPR EGYGGFRGQR 660
  661 EGSRGFRGQR DGNRRFRGQR EGSRGPRGQR SGGGNKSNRS QNKGQKRSFS KAFGQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run None Entered Sample pIC145 from april 2005 Okada, M., et al. (2006)
    View Run gi|14317902, gi|... No Comments Cheeseman, I.M., et al. (2004)
    View Run MIS12 No Comments Cheeseman, I.M., et al. (2004)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..117] FFAS03 1.67 No description for 2j63A was found.
    2 View Details [118..337] PSI-BLAST 36.522879 No description for 2gxqA was found.
    3 View Details [338..498] PSI-BLAST 22.09691 No description for 2hjvA was found.
    4 View Details [499..715] FFAS03 3.21 No description for 2e29A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • translation initiation factor activity
    		•  8.25448175613623 bayes_pls_golite062009
    		• 6.40066880991253 bayes_pls_golite062009
  • RNA binding
    		•  6.32219487559982 bayes_pls_golite062009
  • translation regulator activity
    		•  4.90183970829236 bayes_pls_golite062009
  • mRNA binding
    		•  4.87640532914983 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  4.72415388070659 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.65259034341669 bayes_pls_golite062009
  • structural molecule activity
    		•  4.2958490777925 bayes_pls_golite062009
  • RNA cap binding
    		•  4.1452868296365 bayes_pls_golite062009
  • binding
    		•  3.48033873254013 bayes_pls_golite062009
  • telomeric DNA binding
    		•  3.14144520000442 bayes_pls_golite062009
  • snRNA binding
    		•  2.99850361909067 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  2.7133834347239 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  2.55628738360472 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.2045206027152 bayes_pls_golite062009
  • DNA binding
    		•  1.99030664201171 bayes_pls_golite062009
  • U1 snRNA binding
    		•  1.97699928565988 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  1.33820479438671 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  1.28888975042723 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.26023364760328 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  1.13517096660218 bayes_pls_golite062009
  • transcription factor activity
    		•  1.09958329302628 bayes_pls_golite062009
  • protein binding
    		•  1.05805521997665 bayes_pls_golite062009
  • mRNA 5'-UTR binding
    		•  0.953943296217791 bayes_pls_golite062009
  • transcription elongation regulator activity
    		•  0.950588445732171 bayes_pls_golite062009
  • snoRNA binding
    		•  0.749770142991192 bayes_pls_golite062009
  • transporter activity
    		•  0.651859441112123 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.633093884585572 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  0.514515120448404 bayes_pls_golite062009
  • mRNA 3'-UTR binding
    		•  0.462558743683805 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  0.438822250839508 bayes_pls_golite062009
  • tubulin binding
    		•  0.411965381384795 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.327072171076297 bayes_pls_golite062009
  • microtubule binding
    		•  0.26848788775744 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.191850978900584 bayes_pls_golite062009
  • translation repressor activity, nucleic acid binding
    		•  0.147208072406136 bayes_pls_golite062009
  • ligase activity
    		•  0.115699011007988 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.105881213754909 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  0.0694221760244125 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.0607402568023739 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.0581257157312914 bayes_pls_golite062009
  • protein phosphatase 2B binding
    		•  0.0244897898877268 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle