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Protein Overview: YLL054C

General Information:
Name(s) found: YLL054C [SGD]
Description(s) found:
Found 25 descriptions.
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  • Putative protein of unknown function with similarity to Pip2p, an oleate-specific transcriptional activator of peroxisome proliferation; YLL054C is not an essential gene [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 769 amino acids

    Gene Ontology:
    Cellular Component: plasma membrane [ISSLink to PubMed article]
    Biological Process: biological_process [ND]
    Molecular Function: transcription activator activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIASQKKVK PSFVCLRCKQ RKIKCDKLWP TCSKCKASSS ICSYEVEPGR INKSPTIENA  60
   61 PHRDIRNITP ASMSASGSFT SILNPSTKDW EMKNFAMNLS NAHDKLVVMN NTTIVDSPFA 120
  121 FHSILQHDLY AKALTTCIHE RILIDVERHR ENVSANNKKR ELNLTIGDIG PLFFIDKAAL 180
  181 KFIENTSKTS KLYPPIDFLY NTYDYEQAHP EENNDKISIN ILLEELSKYF LNKNEVDGLI 240
  241 VDFYKTIYPV YPLLEISLFE DNIRELLQLN EFNGYNIVFA GKDSRRKLET ITLLTIILAF 300
  301 SYRRLSLSTS HSFKESFGVK SNNLTLLAHK LLALMNVFQY VNEHTLCCLL YFFILRYLNP 360
  361 DQADMYPTHS DILNLKFLEN VAIKLGLNEE PFQYTRYVSE SDDYPRLFNL RRKLWLGVQF 420
  421 LKFGILIPEG DSDILSLEYL RSFMKTDESL PELFERNYAS TNNLDLSLMA TAENIYHLHL 480
  481 SLQVLLTSCF PINGPSYLKE VLDNIDKTKD FLNQKFPLIL SSLGEPRMKS LHINVPSSLA 540
  541 NEESFDFSTF EENETFIANV ISYTCTMNIY DSLSLHFENQ CFKNALEYKT YYHRFTFTAI 600
  601 QDYLTLLKLI SEYFNGSLLH LREPFGFATQ KVVRFSIHRL LIFQATLLVR LFYKKDTCDR 660
  661 SSAAMGMLND RNGRLSRVIE KMIKLMSYHM KLLVEIVISK LEKSYLGSFI SVSIFRYIIY 720
  721 LVDTDALSAF ISDYWKSDAV MDERYSRIHR IVGLKWGMGR DKSFSFTQN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run MLP2 #29 Asynchronous Prep5-TiO2 Flowthrough Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

      PROTEIN(S) PUBLICATION
    View Data YLL054C Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..150] PSI-BLAST 14.522879 PPR1
    2 View Details [151..210] deduced N/A No confident structure predictions are available.
    3 View Details [211..230]
    [244..254]
    [388..415]    		 ORFEUS 8.29 (+)-bornyl diphosphate synthase
    4 View Details [231..243]
    [255..387]
    [416..705]    		 ORFEUS 8.29 (+)-bornyl diphosphate synthase
    5 View Details [706..769] deduced N/A Confident ab initio structure predictions are available.
    6 View Details [673..769] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  4.16002381293778 bayes_pls_golite062009
  • DNA binding
    		•  3.92936270801133 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.76909067702445 bayes_pls_golite062009
  • binding
    		•  2.91929847152301 bayes_pls_golite062009
  • transcription factor activity
    		•  2.76608547022152 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.80020012839068 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  1.69026374220371 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.54700248976411 bayes_pls_golite062009
  • transcription activator activity
    		•  0.778623988601299 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.
    6 No functions predicted.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.91

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle