YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: VHR1

General Information:
Name(s) found: VHR1 / YIL056W [SGD]
Description(s) found:
Found 29 descriptions.
SHOW ALL
  • Transcriptional activator, required for the vitamin H-responsive element (VHRE) mediated induction of VHT1 (Vitamin H transporter) and BIO5 (biotin biosynthesis intermediate transporter) in response to low biotin concentrations [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 640 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed articleLink to PubMed article]
    cytoplasm [IDALink to PubMed article]
    Biological Process: biotin biosynthetic process [IMPLink to PubMed article]
    regulation of transcription from RNA polymerase II promoter [IMPLink to PubMed article]
    Molecular Function: DNA binding [IDALink to PubMed article]
    transcription activator activity [IDALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGPPTFTQY RINKFSGNGA THKIRELLNF NDEKKWKQFS SRRLELIDKF QLSQYKASEQ  60
   61 DQNIKQIATI LRTEFGYPVS CSKEFEKLVT AAVQSVRRNR KRSKKRYALS IANGSGGNVN 120
  121 NSISSNSTSD DEISPSIYQR SNSDFLPSSN YAADFQFSNK FQPLMSHQSH NGTIFPTVGT 180
  181 QNDSSPSVTS TQQKYNDIVT MLVHDLVTNV VPLSEQALKD PYTGPNLSHF ATSSLSQQPN 240
  241 ITTNIPIDST VPFFLREKLL LQIQRSRTCQ DISQAAGSID IYANLEILGE MSIRMSIAFV 300
  301 IERFFSNLVS SSMKYITAKT CSPENLALLS QRLFGAATRH NLSHFPAAQV QLRLLYLVIG 360
  361 GIVKDFGFDP TLYPLSEIIH HIVMVQYPLA SSCASEPPSS SPNKRVKRSP PVVSSDVMLN 420
  421 NNNTLSNRAT LLTTLPMKPQ SANKDVNRRV IIRFNDREQA FTFHQLSNGP PTVSEVLENC 480
  481 KNLFNIINKN KNFGIFHNDN LLNDESLAKL FDSFSTSEIH LVIKDISTIP LQDAKIPVPI 540
  541 TLPKMSCIGE NPSMPSIPLV PQEKDDPKKS SLTAFDNILN RISKSPMNEE NSNTTLNTGT 600
  601 STSNTNNNDH NESVPAPYVT KNKNSFQNGN LPQPVFQPLL

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Krogan NJ, et al. (2006) SNU13 VHR1
    View Details Gavin AC, et al. (2006) REB1 STM1 VHR1

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run RPA135 No Comments Schneider, DA, et al. (2006)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

      PROTEIN(S) PUBLICATION
    View Data VHR1 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..227] deduced N/A No confident structure predictions are available.
    2 View Details [228..399] ORFEUS 7.44 RNase III endonuclease catalytic domain
    3 View Details [400..640] deduced N/A No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle