Protein Overview: PIN4_YEAST

General Information:
Name(s) found:	PIN4_YEAST [Swiss-Prot]
Description(s) found:	RNA-binding protein PIN4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PIN4 PE=1 SV=1 [Swiss-Prot]
Organism:	Saccharomyces cerevisiae S288c
Length:	668 amino acids
Gene Ontology:
Cellular Component:	NONE FOUND
Biological Process:	NONE FOUND
Molecular Function:	NONE FOUND

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METSSFENAP PAAINDAQDN NINTETNDQE TNQQSIETRD AIDKENGVQT ETGENSAKNA  60
   61 EQNVSSTNLN NAPTNGALDD DVIPNAIVIK NIPFAIKKEQ LLDIIEEMDL PLPYAFNYHF 120
  121 DNGIFRGLAF ANFTTPEETT QVITSLNGKE ISGRKLKVEY KKMLPQAERE RIEREKREKR 180
  181 GQLEEQHRSS SNLSLDSLSK MSGSGNNNTS NNQLFSTLMN GINANSMMNS PMNNTINNNS 240
  241 SNNNNSGNII LNQPSLSAQH TSSSLYQTNV NNQAQMSTER FYAPLPSTST LPLPPQQLDF 300
  301 NDPDTLEIYS QLLLFKDREK YYYELAYPMG ISASHKRIIN VLCSYLGLVE VYDPRFIIIR 360
  361 RKILDHANLQ SHLQQQGQMT SAHPLQPNST GGSMNRSQSY TSLLQAHAAA AANSISNQAV 420
  421 NNSSNSNTIN SNNGNGNNVI INNNSASSTP KISSQGQFSM QPTLTSPKMN IHHSSQYNSA 480
  481 DQPQQPQPQT QQNVQSAAQQ QQSFLRQQAT LTPSSRIPSG YSANHYQINS VNPLLRNSQI 540
  541 SPPNSQIPIN SQTLSQAQPP AQSQTQQRVP VAYQNASLSS QQLYNLNGPS SANSQSQLLP 600
  601 QHTNGSVHSN FSYQSYHDES MLSAHNLNSA DLIYKSLSHS GLDDGLEQGL NRSLSGLDLQ 660
  661 NQNKKNLW

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

New Feature: Upload Your Own Microscopy Data

No microscopy data found in the PDR for this protein.

Protein Structure Data

[What does the above image mean?]
[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..74]	PSI-BLAST	47.221849	Poly(A)-binding protein
2	View Details	[75..164]	PSI-BLAST	57.0	Nuclear ribonucleoprotein A1 (RNP A1, UP1)
3	View Details	[165..300]	PSI-BLAST	57.0	Nuclear ribonucleoprotein A1 (RNP A1, UP1)
4	View Details	[301..443]	MSA	2.206995	View MSA. No confident structure predictions are available.
5	View Details	[444..530]	PSI-BLAST	8.522879	poly(A) binding protein
6	View Details	[531..668]	MSA	2.154996	View MSA. No confident structure predictions are available.

Functions predicted (by domain):

#

Gene Ontology predictions

1

Term	Confidence	Notes
nucleic acid binding	3.64594243387558	bayes_pls_golite062009
binding	3.00411894202318	bayes_pls_golite062009
mRNA binding	2.76744192669109	bayes_pls_golite062009
RNA binding	2.41328743949172	bayes_pls_golite062009
protein binding	1.12215421354121	bayes_pls_golite062009
transcription regulator activity	0.737458867828906	bayes_pls_golite062009
DNA binding	0.691258294213766	bayes_pls_golite062009
mRNA 3'-UTR binding	0.599389001184667	bayes_pls_golite062009
translation regulator activity	0.38120065819101	bayes_pls_golite062009
translation factor activity, nucleic acid binding	0.128616879457381	bayes_pls_golite062009
structural molecule activity	0.0829058000493267	bayes_pls_golite062009
structure-specific DNA binding	0.0666589824195664	bayes_pls_golite062009

2

Term	Confidence	Notes
nucleic acid binding	3.64594243387558	bayes_pls_golite062009
binding	3.00411894202318	bayes_pls_golite062009
mRNA binding	2.76744192669109	bayes_pls_golite062009
RNA binding	2.41328743949172	bayes_pls_golite062009
protein binding	1.12215421354121	bayes_pls_golite062009
transcription regulator activity	0.737458867828906	bayes_pls_golite062009
DNA binding	0.691258294213766	bayes_pls_golite062009
mRNA 3'-UTR binding	0.599389001184667	bayes_pls_golite062009
translation regulator activity	0.38120065819101	bayes_pls_golite062009
translation factor activity, nucleic acid binding	0.128616879457381	bayes_pls_golite062009
structural molecule activity	0.0829058000493267	bayes_pls_golite062009
structure-specific DNA binding	0.0666589824195664	bayes_pls_golite062009

3

Term	Confidence	Notes
binding	1.45278097493666	bayes_pls_golite062009
nucleic acid binding	1.29585787691257	bayes_pls_golite062009
DNA binding	1.21862098093327	bayes_pls_golite062009
transcription regulator activity	1.06027197080527	bayes_pls_golite062009
protein binding	0.741098311996669	bayes_pls_golite062009
catalytic activity	0.307971467423079	bayes_pls_golite062009
structure-specific DNA binding	0.0146459886075777	bayes_pls_golite062009

4

No functions predicted.

5

Term	Confidence	Notes
mRNA binding	2.78281658065802	bayes_pls_golite062009
nucleic acid binding	2.51377464669599	bayes_pls_golite062009
poly(A) RNA binding	2.40208706397043	bayes_pls_golite062009
poly-purine tract binding	2.34978214792168	bayes_pls_golite062009
binding	2.12178506555766	bayes_pls_golite062009
RNA binding	1.38020034067888	bayes_pls_golite062009
single-stranded RNA binding	1.00503950757483	bayes_pls_golite062009
protein binding	0.856075580719879	bayes_pls_golite062009
ligase activity	0.38737123012383	bayes_pls_golite062009
catalytic activity	0.287695754348243	bayes_pls_golite062009
small conjugating protein ligase activity	0.109419310631115	bayes_pls_golite062009
ubiquitin-protein ligase activity	0.0911314408939872	bayes_pls_golite062009
eukaryotic initiation factor 4G binding	0.054315640496152	bayes_pls_golite062009

6

No functions predicted.

Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

Philius Transmembrane Prediction:

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.99

Source: Reynolds et al. (2008)

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle