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Protein Overview: RENT1_ARATH

General Information:
Name(s) found: RENT1_ARATH [Swiss-Prot]
Description(s) found:
Found 9 descriptions.
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  • Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana GN=UPF1 PE=1 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 1254 amino acids

    Gene Ontology:
    Cellular Component: plasma membrane [IDA]
    Biological Process: sugar mediated signaling pathway [IMP]
    RNA interference [IGI]
    response to sucrose stimulus [IGI]
    Molecular Function: ATP binding [IEA]
    DNA binding [IEA]
    RNA helicase activity [ISS]
    hydrolase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSQQSDLFD TASQPDTVAD EYTFLEFNTQ GDSEFDYQDF GSPTAWPTPS DSISIADVAD  60
   61 RGEGGAAADH HSEASSPSSL SAGAGNGAKV GRGGVGGSGG VSSSSQVDAL AAGVGNLNFE 120
  121 ETGDDDGFDY GKNDFTEHAC KYCGISNPAC VVRCNVASCR KWFCNSRGNT SGSHIVNHLV 180
  181 RAKHKEVCLH RDSPLGETIL ECYNCGCRNV FLLGFISAKT DSVVVLLCRD PCLNVNALKD 240
  241 MNWDLSQWCP LIDDRCFLPW LVKVPSEQEQ LRARQISAQQ INKIEELWKT NPDATLEDLE 300
  301 KPGVDDEPQP VQPKYEDAYQ YQNVFAPLIK LEADYDKMMK ESQSKENLTV RWDIGLNKKR 360
  361 VAYFVFPKEE NELRLVPGDE LRLRYSGDAV HPSWQSVGHV IKLTAQEEVA LELRANQGVP 420
  421 IDVNHGFSVD FVWKSTSFDR MQGAMKNFAV DETSVSGYIY HQLLGHEVEA QMVRNTLPRR 480
  481 FGVPGLPELN ASQVNAVKSV LQKPISLIQG PPGTGKTVTS AAIVYHMAKQ GQGQVLVCAP 540
  541 SNVAVDQLAE KISATGLKVV RLCAKSREAV SSPVEYLTLH YQVRHLDTSE KSELHKLQQL 600
  601 KDEQGELSSS DEKKYKNLKR ATEREITQSA DVICCTCVGA ADLRLSNFRF RQVLIDESTQ 660
  661 ATEPECLIPL VLGVKQVVLV GDHCQLGPVI MCKKAARAGL AQSLFERLVT LGIKPIRLQV 720
  721 QYRMHPALSE FPSNSFYEGT LQNGVTIIER QTTGIDFPWP VPNRPMFFYV QLGQEEISAS 780
  781 GTSYLNRTEA ANVEKLVTAF LKSGVVPSQI GVITPYEGQR AYIVNYMARN GSLRQQLYKE 840
  841 IEVASVDSFQ GREKDYIILS CVRSNEHQGI GFLNDPRRLN VALTRARYGI VILGNPKVLS 900
  901 KQPLWNGLLT HYKEHECLVE GPLNNLKQSM VQFQKPRKIY NDRRLFYGGG AGMIGNDNFG 960
  961 SGNPNADRRG SRGRAGGSYL PSGPPNGARP GLHPAGYPIP RVPLSPFPGG PPSQPYAIPT1020
 1021 RGPVGAVPHA PQPGNHGFGA GRGTSVGGHL PHQQATQHNV GTIGPSLNFP LDSPNSQPSP1080
 1081 GGPLSQPGYG SQAFRDGFSM GGISQDFLAD DIKSQGSHDP YNMADFATQA SPGGFAVDYA1140
 1141 TQGAHGAFPG NFMNQNSQGG YSRFSGINDF MSQEYMAHGG QGLFTQAGFI DSSQDDGQQN1200
 1201 PYGVNNPNLQ SQGLPNSLYS QPFAHYNTQP LNLSGPQQSQ PNQSSQNPKH PYNG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..96] deduced N/A No confident structure predictions are available.
    2 View Details [97..313] PSI-BLAST 86.09691 No description for 2iykA was found.
    3 View Details [314..931] PSI-BLAST 1000.0 No description for 2gjkA was found.
    4 View Details [932..1254] PSI-BLAST 48.30103 No description for 1y0fB was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle