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View Structure Prediction Details

Protein: RENT1_ARATH
Organism: Arabidopsis thaliana
Length: 1254 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RENT1_ARATH.

Description E-value Query
Range
Subject
Range
gi|19569060 - gi|19569060|gb|AAL92018.1| UPF1 [Arabidopsis thaliana]
1336.0 [0..12] [1254..1]

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Predicted Domain #1
Region A:
Residues: [1-96]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSQQSDLFD TASQPDTVAD EYTFLEFNTQ GDSEFDYQDF GSPTAWPTPS DSISIADVAD  60
   61 RGEGGAAADH HSEASSPSSL SAGAGNGAKV GRGGVG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [97-313]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSGGVSSSSQ VDALAAGVGN LNFEETGDDD GFDYGKNDFT EHACKYCGIS NPACVVRCNV  60
   61 ASCRKWFCNS RGNTSGSHIV NHLVRAKHKE VCLHRDSPLG ETILECYNCG CRNVFLLGFI 120
  121 SAKTDSVVVL LCRDPCLNVN ALKDMNWDLS QWCPLIDDRC FLPWLVKVPS EQEQLRARQI 180
  181 SAQQINKIEE LWKTNPDATL EDLEKPGVDD EPQPVQP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 86.09691
Match: 2iykA
Description: No description for 2iykA was found.

Predicted Domain #3
Region A:
Residues: [314-931]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KYEDAYQYQN VFAPLIKLEA DYDKMMKESQ SKENLTVRWD IGLNKKRVAY FVFPKEENEL  60
   61 RLVPGDELRL RYSGDAVHPS WQSVGHVIKL TAQEEVALEL RANQGVPIDV NHGFSVDFVW 120
  121 KSTSFDRMQG AMKNFAVDET SVSGYIYHQL LGHEVEAQMV RNTLPRRFGV PGLPELNASQ 180
  181 VNAVKSVLQK PISLIQGPPG TGKTVTSAAI VYHMAKQGQG QVLVCAPSNV AVDQLAEKIS 240
  241 ATGLKVVRLC AKSREAVSSP VEYLTLHYQV RHLDTSEKSE LHKLQQLKDE QGELSSSDEK 300
  301 KYKNLKRATE REITQSADVI CCTCVGAADL RLSNFRFRQV LIDESTQATE PECLIPLVLG 360
  361 VKQVVLVGDH CQLGPVIMCK KAARAGLAQS LFERLVTLGI KPIRLQVQYR MHPALSEFPS 420
  421 NSFYEGTLQN GVTIIERQTT GIDFPWPVPN RPMFFYVQLG QEEISASGTS YLNRTEAANV 480
  481 EKLVTAFLKS GVVPSQIGVI TPYEGQRAYI VNYMARNGSL RQQLYKEIEV ASVDSFQGRE 540
  541 KDYIILSCVR SNEHQGIGFL NDPRRLNVAL TRARYGIVIL GNPKVLSKQP LWNGLLTHYK 600
  601 EHECLVEGPL NNLKQSMV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 2gjkA
Description: No description for 2gjkA was found.

Predicted Domain #4
Region A:
Residues: [932-1254]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QFQKPRKIYN DRRLFYGGGA GMIGNDNFGS GNPNADRRGS RGRAGGSYLP SGPPNGARPG  60
   61 LHPAGYPIPR VPLSPFPGGP PSQPYAIPTR GPVGAVPHAP QPGNHGFGAG RGTSVGGHLP 120
  121 HQQATQHNVG TIGPSLNFPL DSPNSQPSPG GPLSQPGYGS QAFRDGFSMG GISQDFLADD 180
  181 IKSQGSHDPY NMADFATQAS PGGFAVDYAT QGAHGAFPGN FMNQNSQGGY SRFSGINDFM 240
  241 SQEYMAHGGQ GLFTQAGFID SSQDDGQQNP YGVNNPNLQS QGLPNSLYSQ PFAHYNTQPL 300
  301 NLSGPQQSQP NQSSQNPKHP YNG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 48.30103
Match: 1y0fB
Description: No description for 1y0fB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle