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View Structure Prediction Details

Protein: CG4797-PB
Organism: Drosophila melanogaster
Length: 533 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG4797-PB.

Description E-value Query
Range
Subject
Range
gi|49527412 - gi|49527412|emb|CAG61052.1| unnamed protein product [Candida glabrata]
gi|50291337, gi|... - gi|50291337|ref|XP_448101.1| unnamed protein product [Candida glabrata], gi|49527412|emb|CAG61052.1|...
332.0 [0..6] [532..62]

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Predicted Domain #1
Region A:
Residues: [1-533]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVERDDEYL KFVPHTMSYQ VVPGSEFQCK KASYSSRKLS TIDEQDDDAA NRRGMMHQIL  60
   61 ATCAVLLLSA GCGMPIGFSA ILLPQLMDNN STEIPIDVET GSWIASVHSL ATPFGSLLSG 120
  121 PLADYLGRRR TLILSVIPLL LGWSTLAIAK SIKVVIFARF LCGFATGILG GPGQVYIAET 180
  181 AEPNLRSLLI GAPYVAYSSG ILMVYSLGSM MYWRSVAWCA NVLPLLSMVS ISFIPETPAW 240
  241 LLRNGHEKRA LQALSFLRGS EISAQKELND MKQRLAKERV TTKTNENIFQ LCCQRVAIKP 300
  301 LVIVIVFSLL QMFSGTFIVI FYAVDMISEF GAEFDSKQAA IATAVVRVIC CMVFCVVLIF 360
  361 VRRRRIMIVS GIGSGLFCLV LSVYQYARFD QPKMSYDVFV GAGCLLGYII FNTALMVMPG 420
  421 IMIGELFPAR IRGRTAGGVF ASMNVALFIF AKKFPALQAM LKMRGVFLVF GVSSFLLTAF 480
  481 MCLFQPETKG RSLEHIEDYF NGDNWLWFRR DRGYKTVNLQ PLEPLKDTRG LEA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.39794
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
alcohol transmembrane transporter activity 6.7545566917184 bayes_pls_golite062009
polyol transmembrane transporter activity 6.7545566917184 bayes_pls_golite062009
glycerol transmembrane transporter activity 6.54968363274124 bayes_pls_golite062009
glycerol-3-phosphate transmembrane transporter activity 5.40344495119017 bayes_pls_golite062009
transporter activity 4.09176719149278 bayes_pls_golite062009
substrate-specific transporter activity 3.59744164024479 bayes_pls_golite062009
transmembrane transporter activity 3.5865018981083 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 3.54194478414824 bayes_pls_golite062009
hexose phosphate transmembrane transporter activity 3.3746965264994 bayes_pls_golite062009
glucose-6-phosphate transmembrane transporter activity 3.3746965264994 bayes_pls_golite062009
sugar:hydrogen symporter activity 2.99050613058546 bayes_pls_golite062009
cation:sugar symporter activity 2.99050613058546 bayes_pls_golite062009
monosaccharide transmembrane transporter activity 2.63293544825311 bayes_pls_golite062009
carbohydrate transmembrane transporter activity 2.62141276633776 bayes_pls_golite062009
sugar transmembrane transporter activity 2.47557586092261 bayes_pls_golite062009
ion transmembrane transporter activity 2.21266150105753 bayes_pls_golite062009
solute:hydrogen symporter activity 2.10485633822652 bayes_pls_golite062009
cation transmembrane transporter activity 1.79369588808394 bayes_pls_golite062009
active transmembrane transporter activity 1.59419818573076 bayes_pls_golite062009
binding 1.46605775041083 bayes_pls_golite062009
secondary active transmembrane transporter activity 1.22264637452409 bayes_pls_golite062009
symporter activity 0.74591237387473 bayes_pls_golite062009
solute:cation symporter activity 0.74591237387473 bayes_pls_golite062009
sugar binding 0.285073104957756 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle