| Protein: | TRER_ECOLI |
| Organism: | Escherichia coli |
| Length: | 315 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TRER_ECOLI.
| Description | E-value | Query Range |
Subject Range |
|
|
334.0 | [0..5] | [314..2] |
|
|
332.0 | [0..5] | [314..3] |
|
|
331.0 | [0..5] | [314..3] |
|
|
323.0 | [0..4] | [314..2] |
|
|
321.0 | [0..2] | [314..9] |
|
|
319.0 | [0..5] | [314..1] |
|
Region A: Residues: [1-62] |
1 11 21 31 41 51
| | | | | |
1 MQNRLTIKDI ARLSGVGKST VSRVLNNESG VSQLTRERVE AVMNQHGFSP SRSARAMRGQ 60
61 SD
|
| Detection Method: |  |
| Confidence: | 16.154902 |
| Match: | 2bjcA |
| Description: | NMR structure of a protein-DNA complex of an altered specificity mutant of the lac repressor that mimics the gal repressor |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| DNA binding | 3.60509310049517 | bayes_pls_golite062009 |
| transcription regulator activity | 3.48897156115814 | bayes_pls_golite062009 |
| nucleic acid binding | 3.34114111237501 | bayes_pls_golite062009 |
| binding | 2.84855827811506 | bayes_pls_golite062009 |
| transcription factor activity | 2.15956406789231 | bayes_pls_golite062009 |
| catalytic activity | 0.374904657353081 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.29966985317584 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.11459677079129 | bayes_pls_golite062009 |
| transcription repressor activity | 0.0485771867742395 | bayes_pls_golite062009 |
|
Region A: Residues: [63-315] |
1 11 21 31 41 51
| | | | | |
1 KVVAIIVTRL DSLSENLAVQ TMLPAFYEQG YDPIMMESQF SPQLVAEHLG VLKRRNIDGV 60
61 VLFGFTGITE EMLAHWQSSL VLLARDAKGF ASVCYDDEGA IKILMQRLYD QGHRNISYLG 120
121 VPHSDVTTGK RRHEAYLAFC KAHKLHPVAA LPGLAMKQGY ENVAKVITPE TTALLCATDT 180
181 LALGASKYLQ EQRIDTLQLA SVGNTPLMKF LHPEIVTVDP GYAEAGRQAA CQLIAQVTGR 240
241 SEPQQIIIPA TLS
|
| Detection Method: | |
| Confidence: | 39.0 |
| Match: | 1bykA |
| Description: | Trehalose repressor, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.03730517010624 | bayes_pls_golite062009 |
| DNA binding | 2.13752511265098 | bayes_pls_golite062009 |
| transcription factor activity | 2.10452652023643 | bayes_pls_golite062009 |
| nucleic acid binding | 2.05471649974481 | bayes_pls_golite062009 |
| binding | 1.58080550382179 | bayes_pls_golite062009 |
| signal transducer activity | 0.11302624216037 | bayes_pls_golite062009 |
| molecular transducer activity | 0.11302624216037 | bayes_pls_golite062009 |
