YRC Public Data Repository - Protein Structure Prediction

Protein:	PTDA_ECOLI, PTIB...
Organism:	Escherichia coli
Length:	485 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PTDA_ECOLI, PTIB....

Description	E-value	Query Range	Subject Range
gi\|58337744, gi\|... - gi\|58337744\|ref\|YP_194329.1\| PTS enzyme IIABC [Lactobacillus acidophilus NCFM], gi\|58255061\|gb\|AAV43... gi\|227904393, gi... - gi\|227904393\|ref\|ZP_04022198.1\| protein-N(pi)-phosphohistidine--sugar phosphotransferase [Lactobacil...	295.0	[0..2]	[475..101]
gi\|52144365, gi\|... - gi\|52144365\|ref\|YP_082463.1\| PTS system, beta-glucoside-specific enzyme II, ABC component [Bacillus ...	289.0	[0..4]	[476..2]
gi\|10172909, gi\|... - gi\|15612859\|ref\|NP_241162.1\| PTS system, beta-glucoside-specific enzyme II, ABC component [Bacillus ... gi\|25287889 - pir\|\|H83686 PTS system, beta-glucoside-specific enzyme II, ABC component BH0296 [imported] - Bacillu...	287.0	[0..4]	[483..2]
gi\|15894686, gi\|... - gi\|15894686\|ref\|NP_348035.1\| PTS system, beta-glucosides-specific IIABC component [Clostridium aceto... gi\|25287894 - pir\|\|D97073 PTS system, beta-glucosides-specific IIABC component [imported] - Clostridium acetobutyl...	283.0	[0..4]	[483..2]
gi\|52787877, gi\|... - gi\|52787877\|ref\|YP_093706.1\| hypothetical protein BLi04200 [Bacillus licheniformis ATCC 14580], gi\|5...	281.0	[0..4]	[472..2]
gi\|192957052, gi... - gi\|75235692\|ref\|ZP_00719866.1\| COG1263: Phosphotransferase system IIC components, glucose/maltose/N-...	281.0	[0..1]	[485..1]
gi\|75256915, gi\|... - gi\|75256915\|ref\|ZP_00728491.1\| COG1263: Phosphotransferase system IIC components, glucose/maltose/N-... gi\|194414097, gi... - gi\|75210914\|ref\|ZP_00711038.1\| COG1263: Phosphotransferase system IIC components, glucose/maltose/N-...	281.0	[0..1]	[485..1]

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Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKNYAALAR SVIAALGGVD NISAVTHCMT RLRFVIKDDA LIDSPTLKTI PGVLGVVRSD  60
   61 NQCQVIIGNT VSQAFQEVVS LLPG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.30103
Match:	1o2fB
Description:	Glucose permease domain IIB
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.61117010765727	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [85-215]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DMQPAQPVGK PKLTLRRIGA GILDALIGTM SPLIPAIIGG SMVKLLAMIL EMSGVLTKGS  60
   61 PTLTILNVIG DGAFFFLPLM VAASAAIKFK TNMSLAIAIA GVLVHPSFIE LMAKAAQGEH 120
  121 VEFALIPVTA V

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [216-326]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KYTYTVIPAL VMTWCLSYIE RWVDSITPAV TKNFLKPMLI VLIAAPLAIL LIGPIGIWIG  60
   61 SAISALVYTI HGYLGWLSVA IMGALWPLLV MTGMHRVFTP TIIQTIAETG K

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [327-485]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EGMVMPSEIG ANLSLGGSSL AVAWKTKNPE LRQTALAAAA SAIMAGISEP ALYGVAIRLK  60
   61 RPLIASLISG FICGAVAGMA GLASHSMAAP GLFTSVQFFD PANPMSIVWV FAVMALAVVL 120
  121 SFILTLLLGF EDIPVEEAAA QARKYQSVQP TVAKEVSLN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: