YRC Public Data Repository - Protein Structure Prediction

Protein:	RS10_OCHA4
Organism:	Ochrobactrum anthropi ATCC 49188
Length:	102 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS10_OCHA4.

Description	E-value	Query Range	Subject Range
gi\|83312230, gi\|... - gi\|83312230\|ref\|YP_422494.1\| Ribosomal protein S10 [Magnetospirillum magneticum AMB-1], gi\|82947071\|...	159.0	[0..1]	[102..24]
gi\|48871257 - gi\|48871257\|ref\|ZP_00323973.1\| COG0051: Ribosomal protein S10 [Pediococcus pentosaceus ATCC 25745]	158.0	[0..1]	[102..41]
gi\|52426104, gi\|... - gi\|52426104\|ref\|YP_089241.1\| 30S ribosomal protein S10 [Mannheimia succiniciproducens MBEL55E], gi\|5...	155.0	[0..1]	[102..20]
RS10_RHOPB - 30S ribosomal protein S10 OS=Rhodopseudomonas palustris (strain BisB18) GN=rpsJ PE=3 SV=1	154.0	[0..1]	[102..1]
gi\|1075260 - gi\|1075260\|pir\|\|D64092 ribosomal protein S10 - Haemophilus influenzae (strain Rd KW20) gi\|46133133 - gi\|46133133\|ref\|ZP_00156632.2\| COG0051: Ribosomal protein S10 [Haemophilus influenzae R2866] gi\|48868599 - ref\|ZP_00321912.1\| COG0051: Ribosomal protein S10 [Haemophilus influenzae 86-028NP] gi\|1573786, gi\|1... - gi\|16272717\|ref\|NP_438935.1\| 30S ribosomal protein S10 [Haemophilus influenzae Rd KW20], gi\|1573786\|...	153.0	[0..1]	[102..16]
gi\|85692800, gi\|... - gi\|85713372\|ref\|ZP_01044381.1\| 30S ribosomal protein S10 [Idiomarina baltica OS145], gi\|85692800\|gb\|...	153.0	[0..1]	[102..1]
RS10_IDILO - 30S ribosomal protein S10 OS=Idiomarina loihiensis GN=rpsJ PE=3 SV=1 RS10_IDILO - 30S ribosomal protein S10 OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) GN=rpsJ...	153.0	[0..1]	[102..1]
RS10_PSYWF - 30S ribosomal protein S10 OS=Psychrobacter sp. (strain PRwf-1) GN=rpsJ PE=3 SV=1	152.0	[0..1]	[102..1]
gi\|90417764, gi\|... - gi\|90417764\|ref\|ZP_01225676.1\| ribosomal protein S10 [Aurantimonas sp. SI85-9A1], gi\|90337436\|gb\|EAS... gi\|90417764, gi\|... - gi\|90417764\|ref\|ZP_01225676.1\| ribosomal protein S10 [Aurantimonas sp. SI85-9A1], gi\|90337436\|gb\|EAS...	152.0	[0..1]	[102..1]
RS10_THIDA - 30S ribosomal protein S10 OS=Thiobacillus denitrificans (strain ATCC 25259) GN=rpsJ PE=3 SV=1	152.0	[0..1]	[102..1]

Back

Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGQNIRIRL KAFDHRILDA STREIVSTAK RTGANVRGPI PLPTRIEKFT VNRSPHIDKK  60
   61 SREQFEMRTH KRLLDIVDPT PQTVDALMKL DLSAGVDVEI KL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.221849
Match:	1p6gJ
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.82905885280588	bayes_pls_golite062009
structural molecule activity	9.25405593567362	bayes_pls_golite062009
binding	0.795193544824207	bayes_pls_golite062009
RNA binding	0.60427462690745	bayes_pls_golite062009
nucleic acid binding	0.513619902565835	bayes_pls_golite062009
protein binding	0.180450584965049	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: