YRC Public Data Repository - Protein Structure Prediction

Protein:	FRYB_ECOLI, PTFB...
Organism:	Escherichia coli
Length:	108 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FRYB_ECOLI, PTFB....

Description	E-value	Query Range	Subject Range
gi\|20517596, gi\|... - gi\|20808934\|ref\|NP_624105.1\| phosphotransferase system, fructose-specific IIC component [Thermoanaer... gi\|20808934 - gi\|20808934\|ref\|NP_624105.1\| Phosphotransferase system, fructose-specific IIC component [Thermoanaer...	170.0	[0..3]	[102..2]
gi\|110681997, gi... - gi\|110801496\|ref\|YP_697878.1\| fructose specific permease [Clostridium perfringens SM101], gi\|1106819...	163.0	[0..2]	[104..170]
gi\|18144243, gi\|... - gi\|18309566\|ref\|NP_561500.1\| PTS system [Clostridium perfringens str. 13], gi\|18144243\|dbj\|BAB80290....	163.0	[0..2]	[104..170]
gi\|18139844 - gi\|18139844\|gb\|AAL60167.1\|AF416702_5 TagT [Klebsiella oxytoca]	163.0	[0..3]	[108..2]
gi\|110674944, gi... - gi\|110800297\|ref\|YP_695018.1\| PTS system, fructose-specific, IIABC component [Clostridium perfringen...	163.0	[0..2]	[104..170]
gi\|90573331, gi\|... - gi\|90573331\|ref\|ZP_01229847.1\| hypothetical protein CdifQ_02003356 [Clostridium difficile QCD-32g58]... gi\|255518425 - gi\|255518425\|ref\|ZP_05386101.1\| PTS system, IIABC component [Clostridium difficile QCD-97b34] gi\|255651543 - gi\|255651543\|ref\|ZP_05398445.1\| PTS system, IIABC component [Clostridium difficile QCD-37x79] gi\|254976628 - gi\|254976628\|ref\|ZP_05273100.1\| PTS system, IIABC component [Clostridium difficile QCD-66c26] gi\|255094013 - gi\|255094013\|ref\|ZP_05323491.1\| PTS system, IIABC component [Clostridium difficile CIP 107932] gi\|255315764 - gi\|255315764\|ref\|ZP_05357347.1\| PTS system, IIABC component [Clostridium difficile QCD-76w55]	162.0	[0..1]	[103..1]
gi\|115376875, gi... - gi\|115376875\|ref\|ZP_01464097.1\| pts system fructose-specific eiibbc component (eiibbc-fru) [Stigmate...	162.0	[0..3]	[103..126]
gi\|227176032, gi... - gi\|227554832\|ref\|ZP_03984879.1\| PTS system, fructose specific IIABC component [Enterococcus faecalis... gi\|229546554, gi... - gi\|229546554\|ref\|ZP_04435279.1\| PTS system, fructose specific IIABC component [Enterococcus faecalis... gi\|29342773, gi\|... - gi\|29375313\|ref\|NP_814467.1\| PTS system, fructose-specific family, IIABC components [Enterococcus fa...	162.0	[0..3]	[104..173]
gi\|126700692, gi... - gi\|126700692\|ref\|YP_001089589.1\| PTS system, IIABC component [Clostridium difficile 630], gi\|1152521...	162.0	[0..1]	[103..1]
gi\|48870654, gi\|... - gi\|48870654\|ref\|ZP_00323374.1\| COG1299: Phosphotransferase system, fructose-specific IIC component [...	161.0	[0..1]	[101..1]

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Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKKLIALCA CPMGLAHTFM AAQALEEAAV EAGYEVKIET QGADGIQNRL TAQDIAEATI  60
   61 IIHSVAVTPE DNERFESRDV YEITLQDAIK NAAGIIKEIE EMIASEQQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.154902
Match:	2r48A
Description:	No description for 2r48A was found.

Predicted functions:

Term	Confidence	Notes
protein-N(PI)-phosphohistidine-sugar phosphotransferase activity	5.08041453921791	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	4.49138214292642	bayes_pls_golite062009
fructose transmembrane transporter activity	2.02791322402201	bayes_pls_golite062009
sugar transmembrane transporter activity	1.77053981674308	bayes_pls_golite062009
transporter activity	1.6837050020547	bayes_pls_golite062009
transmembrane transporter activity	1.5685227361887	bayes_pls_golite062009
monosaccharide transmembrane transporter activity	1.38987536600292	bayes_pls_golite062009
substrate-specific transporter activity	1.32293422112884	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	1.217268678967	bayes_pls_golite062009
active transmembrane transporter activity	1.12964417923438	bayes_pls_golite062009
hexose transmembrane transporter activity	0.80355002679172	bayes_pls_golite062009
binding	0.472595683811139	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.37663629577414	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.0296784994545702	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: