Protein: | CADB_ECOLI |
Organism: | Escherichia coli |
Length: | 444 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CADB_ECOLI.
Description | E-value | Query Range |
Subject Range |
|
282.0 | [0..5] | [371..975] |
|
260.0 | [0..3] | [366..2477] |
|
255.0 | [0..3] | [439..145] |
|
253.0 | [0..3] | [412..109] |
|
252.0 | [0..3] | [432..1101] |
|
252.0 | [0..3] | [430..106] |
|
251.0 | [0..18] | [442..389] |
|
251.0 | [0..3] | [431..78] |
|
249.0 | [0..2] | [439..88] |
Region A: Residues: [1-376] |
1 11 21 31 41 51 | | | | | | 1 MSSAKKIGLF ACTGVVAGNM MGSGIALLPA NLASIGGIAI WGWIISIIGA MSLAYVYARL 60 61 ATKNPQQGGP IAYAGEISPA FGFQTGVLYY HANWIGNLAI GITAVSYLST FFPVLNDPVP 120 121 AGIACIAIVW VFTFVNMLGG TWVSRLTTIG LVLVLIPVVM TAIVGWHWFD AATYAANWNT 180 181 ADTTDGHAII KSILLCLWAF VGVESAAVST GMVKNPKRTV PLATMLGTGL AGIVYIAATQ 240 241 VLSGMYPSSV MAASGAPFAI SASTILGNWA APLVSAFTAF ACLTSLGSWM MLVGQAGVRA 300 301 ANDGNFPKVY GEVDSNGIPK KGLLLAAVKM TALMILITLM NSAGGKASDL FGELTGIAVL 360 361 LTMLPYFYSC VDLIRF |
Detection Method: | |
Confidence: | 1.52 |
Match: | 2a65A |
Description: | Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
amine transmembrane transporter activity | 5.15069657292327 | bayes_pls_golite062009 |
amino acid transmembrane transporter activity | 4.54752581624334 | bayes_pls_golite062009 |
carboxylic acid transmembrane transporter activity | 4.39427743642027 | bayes_pls_golite062009 |
organic acid transmembrane transporter activity | 4.356142166703 | bayes_pls_golite062009 |
transporter activity | 3.46503611631839 | bayes_pls_golite062009 |
transmembrane transporter activity | 3.34431027577801 | bayes_pls_golite062009 |
substrate-specific transporter activity | 3.08398439124803 | bayes_pls_golite062009 |
active transmembrane transporter activity | 2.98812190037621 | bayes_pls_golite062009 |
substrate-specific transmembrane transporter activity | 2.96577701947757 | bayes_pls_golite062009 |
ion transmembrane transporter activity | 1.89542769737674 | bayes_pls_golite062009 |
organic acid:sodium symporter activity | 1.82263833070018 | bayes_pls_golite062009 |
L-amino acid transmembrane transporter activity | 1.79964917042361 | bayes_pls_golite062009 |
cation transmembrane transporter activity | 1.79923665576923 | bayes_pls_golite062009 |
neutral amino acid transmembrane transporter activity | 1.71764370341895 | bayes_pls_golite062009 |
monoamine transmembrane transporter activity | 1.59349600647168 | bayes_pls_golite062009 |
secondary active transmembrane transporter activity | 1.37015067735708 | bayes_pls_golite062009 |
symporter activity | 1.31198147603118 | bayes_pls_golite062009 |
solute:cation symporter activity | 1.31198147603118 | bayes_pls_golite062009 |
solute:sodium symporter activity | 0.868753445363102 | bayes_pls_golite062009 |
neurotransmitter:sodium symporter activity | 0.658077875061275 | bayes_pls_golite062009 |
binding | 0.299468111884938 | bayes_pls_golite062009 |
Region A: Residues: [377-444] |
1 11 21 31 41 51 | | | | | | 1 EGVNIRNFVS LICSVLGCVF CFIALMGASS FELAGTFIVS LIILMFYARK MHERQSHSMD 60 61 NHTASNAH |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.