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View Structure Prediction Details

Protein: PAO3_ARATH
Organism: Arabidopsis thaliana
Length: 488 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PAO3_ARATH.

Description E-value Query
Range
Subject
Range
gi|21553762 - gi|21553762|gb|AAM62855.1| putative amine oxidase [Arabidopsis thaliana]
314.0 [0..1] [488..1]

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Predicted Domain #1
Region A:
Residues: [1-488]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESGGKTNRQ LRKAICVSTD EKMKKKRSPS VIVIGGGMAG ISAARTLQDA SFQVVVLESR  60
   61 DRIGGRVHTD YSFGFPVDLG ASWLHGVCKE NPLAAVIGRL GLPLYRTSGD NSVLYDHDLE 120
  121 SYALFDKAGN QVSQELVTKV GENFEHILEE ICKVRDEQDE DMSIAQAFSI VFKRNPELRL 180
  181 EGLAHNVLQW YLCRMEGWFA ADAETISAKC WDQEELLPGG HGLMVRGYRP VINTLSKGLD 240
  241 IRLSHRITKI SRRYSGVKVT TEKGDTFVAD AAVIALPLGV LKSGMITFEP KLPQWKQEAI 300
  301 NDLGVGIENK IILNFDNVFW PNVEFLGVVA ETSYGCSYFL NLHKATSHPV LVYMPAGQLA 360
  361 RDIEKKSDEA AANFAFSQLQ KILPDASSPI NYLVSRWGSD INSLGSYSYD IVNKPHDLYE 420
  421 RLRVPLDNLF FAGEATSSSY PGSVHGAYST GVLAAEDCRM RVLERYGELE HEMEEEAPAS 480
  481 VPLLISRM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 53.0
Match: 1b37A
Description: Polyamine oxidase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
oxidoreductase activity, acting on NADH or NADPH 4.45434904225178 bayes_pls_golite062009
oxidoreductase activity 3.14765787292933 bayes_pls_golite062009
oxygen-dependent protoporphyrinogen oxidase activity 2.16428165652808 bayes_pls_golite062009
catalytic activity 1.56773888754354 bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor 1.45104542724719 bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors 1.31328088143083 bayes_pls_golite062009
binding 0.794954996246594 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 0.371264650472162 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 0.310073315826648 bayes_pls_golite062009
cation transmembrane transporter activity 0.245675073327507 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 0.136468409000919 bayes_pls_golite062009
dihydrolipoyl dehydrogenase activity 0.130601418359425 bayes_pls_golite062009
protein binding 0.0171008177759692 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle