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View Structure Prediction Details

Protein: GRS17_ARATH
Organism: Arabidopsis thaliana
Length: 488 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GRS17_ARATH.

Description E-value Query
Range
Subject
Range
GRS11_ORYSJ - Monothiol glutaredoxin-S11 OS=Oryza sativa subsp. japonica GN=GRXS11 PE=2 SV=2
GRS11_ORYSA - Monothiol glutaredoxin-S11 - Oryza sativa (Rice)
353.0 [0..3] [488..2]

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Predicted Domain #1
Region A:
Residues: [1-108]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGTVKDIVS KAELDNLRQS GAPVVLHFWA SWCDASKQMD QVFSHLATDF PRAHFFRVEA  60
   61 EEHPEISEAY SVAAVPYFVF FKDGKTVDTL EGADPSSLAN KVGKVAGS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.0
Match: 2h71A
Description: No description for 2h71A was found.

Predicted Domain #2
Region A:
Residues: [109-275]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STSAEPAAPA SLGLAAGPTI LETVKENAKA SLQDRAQPVS TADALKSRLE KLTNSHPVML  60
   61 FMKGIPEEPR CGFSRKVVDI LKEVNVDFGS FDILSDNEVR EGLKKFSNWP TFPQLYCNGE 120
  121 LLGGADIAIA MHESGELKDA FKDLGITTVG SKESQDEAGK GGGVSSG

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 26.070581
Match: PF00462.15
Description: No description for PF00462.15 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [276-385]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NTGLSETLRA RLEGLVNSKP VMLFMKGRPE EPKCGFSGKV VEILNQEKIE FGSFDILLDD  60
   61 EVRQGLKVYS NWSSYPQLYV KGELMGGSDI VLEMQKSGEL KKVLTEKGIT 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 5.51
Match: 1wikA
Description: Solution Structure of the PICOT homology 2 domain of the mouse PKC-interacting cousin of thioredoxin protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
antioxidant activity 3.45422763338464 bayes_pls_golite062009
peroxidase activity 3.05584920088255 bayes_pls_golite062009
oxidoreductase activity, acting on peroxide as acceptor 3.05584920088255 bayes_pls_golite062009
glutathione peroxidase activity 2.13640976765984 bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors 1.90417568039966 bayes_pls_golite062009
peroxiredoxin activity 1.6894977406333 bayes_pls_golite062009
thioredoxin peroxidase activity 1.52200084923215 bayes_pls_golite062009
binding 1.1344758613689 bayes_pls_golite062009
protein disulfide oxidoreductase activity 1.09469738939648 bayes_pls_golite062009
disulfide oxidoreductase activity 0.930505868030397 bayes_pls_golite062009
selenium binding 0.738904577086135 bayes_pls_golite062009
catalytic activity 0.646676412582618 bayes_pls_golite062009
transcription regulator activity 0.274467628917383 bayes_pls_golite062009
protein binding 0.0691977836918879 bayes_pls_golite062009

Predicted Domain #4
Region A:
Residues: [386-488]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GEQSLEDRLK ALINSSEVML FMKGSPDEPK CGFSSKVVKA LRGENVSFGS FDILTDEEVR  60
   61 QGIKNFSNWP TFPQLYYKGE LIGGCDIIME LSESGDLKAT LSE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 31.0
Match: 1ykaA
Description: Solution structure of Grx4, a monothiol glutaredoxin from E. coli.
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle