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View Structure Prediction Details

Protein: JAL29_ARATH
Organism: Arabidopsis thaliana
Length: 619 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for JAL29_ARATH.

Description E-value Query
Range
Subject
Range
JAL28_ARATH - Nitrile-specifier protein 1 OS=Arabidopsis thaliana GN=NSP1 PE=2 SV=2
363.0 [0..151] [619..2]

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Predicted Domain #1
Region A:
Residues: [1-142]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQKVEAQGG NGGNQWDDGS EYDAVTKIQV AAGGNGIEYV KFTYVKNGQT EEAPLRGVKG  60
   61 RSFEADPFVI NHPEEHLVSV EGRYNPEGLI LGLTFKSNKK TSDLIGYEDG TPFTLQVQDK 120
  121 KIVGFYGFAG NNLHSLGAYF AP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 23.69897
Match: 1zgrA
Description: Crystal structure of the Parkia platycephala seed lectin
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [143-514]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LTNVTPLNAK KLEAKGGDTG DIWDDGVYDN VRKVYVGQAQ YGIAFVKFEY VNGSQVVVGD  60
   61 EHGKKTELGV EEFEIDADDY IVYVEGYREK VNGMTSEMIT FLSFKTYKGK TSQPIEQRPG 120
  121 IKFVLQGGKI VGFHGRSTDV LDSLGAYISL SPTPNLHGKW TKVDENGDGP GLRCSHDIAQ 180
  181 VGNKIYSFGG EFTPNQPIDK HLYVFDIESR TWSISPATGD IPTLSCLGVC MVSIGSTLYV 240
  241 FGGRDASRQY NGFYSFDTTT NEWKLLTPVE EGPTPRSFHS MAADEENVYV FGGVSATARL 300
  301 NTLDSYNIVD KKWFHCSTPG DSLTARGGAG LEVVQGKVWV VYGFNGCEVD DVHYYDPVQD 360
  361 KWTQVETFGV RP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.221849
Match: 1qhuA
Description: Hemopexin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.39138979674162 bayes_pls_golite062009
catalytic activity 0.055192735886245 bayes_pls_golite062009
hydrolase activity 0.00353231833192195 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [515-619]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SERSVFASAA LGKHIVIFGG EIAMDPLAHV GPGQLTDGTF ALDTETLQWE RLDKFGGEEE  60
   61 TPSSRGWTAS TTATIGGKKG LVMHGGKAPT NDRFDDLFFY GIDSA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 65.0
Match: 1x2jA
Description: Structural basis for the defects of human lung cancer somatic mutations in the repression activity of Keap1 on Nrf2
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle