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View Structure Prediction Details

Protein: ETFB_ARATH
Organism: Arabidopsis thaliana
Length: 251 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ETFB_ARATH.

Description E-value Query
Range
Subject
Range
gi|21537123 - gi|21537123|gb|AAM61464.1| electron transfer flavoprotein beta-subunit-like [Arabidopsis thaliana]
305.0 [0..1] [251..1]

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Predicted Domain #1
Region A:
Residues: [1-251]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKILVAVKRV VDYAVKIRVK PDKTGVETQN VKMSMNPFCE IALEEALRIK EAGFAKEVIA  60
   61 VSIGPSQCVD TLRTGLAMGA DRGIHVETNS IFLPLTIAKI LKSLADVENP GLIFLGKQAI 120
  121 DDDCNQTGQM VAALLGWPQA TFASKVVLDK DKNVATVDRE VDGGLETLNV DLPAVITTDL 180
  181 RLNQPRYASL PNIMKAKSKP IKKMTVQDLK VDIKSDIEIL EVTEPPKRKS GVMVSSVDEL 240
  241 IDKLKNEAHV V

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 76.69897
Match: 1efvB
Description: Small, beta subunit of electron transfer flavoprotein ETFP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.91619517870463 bayes_pls_golite062009
nucleic acid binding 1.38436645708366 bayes_pls_golite062009
DNA binding 1.35936746868519 bayes_pls_golite062009
ligase activity 1.13489674466232 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.883268134837366 bayes_pls_golite062009
catalytic activity 0.828867994386867 bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds 0.724532065311415 bayes_pls_golite062009
electron carrier activity 0.40873603017227 bayes_pls_golite062009
transferase activity 0.40273889227698 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle