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View Structure Prediction Details

Protein: TRXM4_ARATH
Organism: Arabidopsis thaliana
Length: 193 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TRXM4_ARATH.

Description E-value Query
Range
Subject
Range
gi|6539614 - gi|6539614|gb|AAF15951.1|AF095752_1 thioredoxin m4 [Arabidopsis thaliana]
177.0 [0..1] [193..1]

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Predicted Domain #1
Region A:
Residues: [1-85]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLLDSVTV TRVFSLPIAA SVSSSSAAPS VSRRRISPAR FLEFRGLKSS RSLVTQSASL  60
   61 GANRRTRIAR GGRIACEAQD TTAAA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [86-193]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VEVPNLSDSE WQTKVLESDV PVLVEFWAPW CGPCRMIHPI VDQLAKDFAG KFKFYKINTD  60
   61 ESPNTANRYG IRSVPTVIIF KGGEKKDSII GAVPRETLEK TIERFLVE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.0
Match: 1fb0A
Description: Thioredoxin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
antioxidant activity 3.8464796631544 bayes_pls_golite062009
peroxidase activity 3.43831566988273 bayes_pls_golite062009
oxidoreductase activity, acting on peroxide as acceptor 3.43831566988273 bayes_pls_golite062009
oxidoreductase activity 2.63737118711715 bayes_pls_golite062009
glutathione peroxidase activity 2.56524997297011 bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors 2.23310780102446 bayes_pls_golite062009
peroxiredoxin activity 2.12777217096121 bayes_pls_golite062009
selenium binding 1.97148144306198 bayes_pls_golite062009
thioredoxin peroxidase activity 1.96134566495756 bayes_pls_golite062009
protein disulfide oxidoreductase activity 1.47769936616412 bayes_pls_golite062009
disulfide oxidoreductase activity 1.32811008894503 bayes_pls_golite062009
binding 0.704132579378598 bayes_pls_golite062009
catalytic activity 0.129588295266429 bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH 0.0801269279614203 bayes_pls_golite062009

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