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View Structure Prediction Details

Protein: TCPA_ARATH
Organism: Arabidopsis thaliana
Length: 545 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TCPA_ARATH.

Description E-value Query
Range		 Subject
Range
gi|27881870, gi|... - gi|27881870|gb|AAH44397.1| Tcp1 protein [Danio rerio], gi|182888658|gb|AAI64034.1| Tcp1 protein [Dan...
 488.0 [0..1] [543..1]

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Predicted Domain #1
Region A:
Residues: [1-545] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSISAQNPDI SGDRQSGQDV RTQNVMACQA VSNIVKTSLG PVGLDKMLVD DIGDVTITND  60
   61 GATILRMLEV EHPAAKVLVE LAELQDREVG DGTTSVVIVA AELLKRANDL VRNKIHPTSI 120
  121 ISGYRLAMRE SCKYIEEKLV TKVEKLGKVP LINCAKTSMS SKLISGDSDF FANLVVEAVL 180
  181 SVKMTNQRGE IKYPIKGINI LKAHGQSARD SYLLNGYALN TGRAAQGMPL RVSPAKIACL 240
  241 DFNLQKTKMQ LGVQVVVNDP RELEKIRQRE ADMTKERIEK LLKAGANVIL TTKGIDDMAL 300
  301 KYFVEAGAIA VRRVRKEDMR HVAKATGATL VTTFADMEGE ETFDPAHLGS ADEVVEERIA 360
  361 DDDVILIKGT KTSSAVSLIL RGANDYMLDE MERALHDALC IVKRTLESNT VVAGGGAVES 420
  421 ALSVYLEHLA TTLGSREQLA IAEFADALLI IPKVLAVNAA KDATELVAKL RAYHHTAQTK 480
  481 ADKKHYSSMG LDLVNGTIRN NLEAGVIEPA MSKVKIIQFA TEAAITILRI DDMIKLVKDE 540
  541 SQGEE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 132.0
Match: 1a6dA
Description: Thermosome, E domain; Thermosome, A-domain; Thermosome, I domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
unfolded protein binding 9.9038451294995 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 3.6934849790316 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 3.40373598585301 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 3.28982639907979 bayes_pls_golite062009
binding 3.11215702001989 bayes_pls_golite062009
protein binding 2.03574683256805 bayes_pls_golite062009
nucleoside-triphosphatase activity 1.88769858570433 bayes_pls_golite062009
ATPase activity 1.85640607183492 bayes_pls_golite062009
pyrophosphatase activity 1.81343301131567 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 1.79412354283105 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 1.79183933227438 bayes_pls_golite062009
nucleic acid binding 1.67284737458957 bayes_pls_golite062009
DNA binding 1.60256620441721 bayes_pls_golite062009
transporter activity 1.27879339110564 bayes_pls_golite062009
transmembrane transporter activity 1.08697283907212 bayes_pls_golite062009
chaperone binding 0.91200031047441 bayes_pls_golite062009
substrate-specific transporter activity 0.828920415160435 bayes_pls_golite062009
hydrolase activity 0.577900060851977 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 0.573106450426516 bayes_pls_golite062009
ATPase activity, coupled 0.527748436977659 bayes_pls_golite062009
ion transmembrane transporter activity 0.280310103153739 bayes_pls_golite062009
active transmembrane transporter activity 0.275534581026027 bayes_pls_golite062009
hydrogen-exporting ATPase activity, phosphorylative mechanism 0.26275673855778 bayes_pls_golite062009
primary active transmembrane transporter activity 0.252704226951294 bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity 0.243984617084631 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances 0.205808843369749 bayes_pls_golite062009
ATPase activity, coupled to movement of substances 0.202279803135899 bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances 0.20198255686005 bayes_pls_golite062009
transferase activity 0.18639662517366 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 0.16424934648837 bayes_pls_golite062009
catalytic activity 0.107125378994589 bayes_pls_golite062009
kinase activity 0.0871496920547826 bayes_pls_golite062009
cation transmembrane transporter activity 0.0778814959589007 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle