Protein: | SY123_ARATH |
Organism: | Arabidopsis thaliana |
Length: | 305 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SY123_ARATH.
Description | E-value | Query Range |
Subject Range |
|
184.0 | [0..1] | [300..1] |
Region A: Residues: [1-305] |
1 11 21 31 41 51 | | | | | | 1 MNDLISSSFK RYTDLNHQVQ LDDIESQNVS LDSGNLDEFF GYVESVKEDM KAVDEIHKRL 60 61 QDANEESKTV HDSKAVKKLR ARMDSSVTEV LKRVKMIKTK LVALEKSNAA QRKVAGCGPG 120 121 SSADRTRTSV VSGLGKKLKD MMDDFQRLRT KMATEYKETV ERRYFTVTGQ KADEETVEKL 180 181 ISSGESERFL QKAIQEQGRG QVMDTLSEIQ ERHDTVKEIE RSLLELHQVF LDMAALVEAQ 240 241 GNMLNDIESN VSKASSFVMR GTDQLHGAKV LQRNNRKWAC IATILAIVVV IVILFPILFN 300 301 TLLRP |
Detection Method: | |
Confidence: | 31.69897 |
Match: | 1dn1B |
Description: | Syntaxin 1A N-terminal domain |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
phosphatidic acid binding | 8.51970136264329 | bayes_pls_golite062009 |
SNAP receptor activity | 3.50393203740159 | bayes_pls_golite062009 |
calcium channel inhibitor activity | 3.28773614634352 | bayes_pls_golite062009 |
protein transporter activity | 2.96543140800925 | bayes_pls_golite062009 |
binding | 2.76125772097759 | bayes_pls_golite062009 |
protein binding | 2.66728689880621 | bayes_pls_golite062009 |
SNARE binding | 1.85060343142976 | bayes_pls_golite062009 |
cytoskeletal protein binding | 1.84645272212664 | bayes_pls_golite062009 |
transporter activity | 1.74189664015129 | bayes_pls_golite062009 |
myosin head/neck binding | 1.62782051964352 | bayes_pls_golite062009 |
extracellular ligand-gated ion channel activity | 1.54368755758216 | bayes_pls_golite062009 |
excitatory extracellular ligand-gated ion channel activity | 1.54368755758216 | bayes_pls_golite062009 |
substrate-specific transporter activity | 1.49085442233849 | bayes_pls_golite062009 |
transmembrane transporter activity | 1.13101548288086 | bayes_pls_golite062009 |
calcium channel regulator activity | 1.03966990325407 | bayes_pls_golite062009 |
substrate-specific transmembrane transporter activity | 0.643064875848901 | bayes_pls_golite062009 |
gated channel activity | 0.621670335227137 | bayes_pls_golite062009 |
ligand-gated ion channel activity | 0.41937155561589 | bayes_pls_golite062009 |
ligand-gated channel activity | 0.41937155561589 | bayes_pls_golite062009 |
extracellular-glutamate-gated ion channel activity | 0.394485000881621 | bayes_pls_golite062009 |
ion transmembrane transporter activity | 0.370484918396857 | bayes_pls_golite062009 |
myosin heavy chain binding | 0.29109171472743 | bayes_pls_golite062009 |
myosin binding | 0.17223293441022 | bayes_pls_golite062009 |
passive transmembrane transporter activity | 0.0647076360772156 | bayes_pls_golite062009 |
channel activity | 0.0647076360772156 | bayes_pls_golite062009 |
substrate-specific channel activity | 0.0435980899803177 | bayes_pls_golite062009 |
phospholipid binding | 0.0172309833091902 | bayes_pls_golite062009 |