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View Structure Prediction Details

Protein: MCCB_ARATH
Organism: Arabidopsis thaliana
Length: 587 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MCCB_ARATH.

Description E-value Query
Range
Subject
Range
gi|77867399, gi|... - gi|77953629|ref|ZP_00818035.1| 3-methylcrotonyl-CoA carboxylase beta subunit [Marinobacter aquaeolei...
584.0 [0..47] [587..1]

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Predicted Domain #1
Region A:
Residues: [1-72]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRILGRRVV SASKELTSIQ QWRIRPGTDS RPDPFRTFRG LQKGFCVGIL PDGVDRNSEA  60
   61 FSSNSIAMEG IL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [73-587]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SELRSHIKKV LAGGGEEAVK RNRSRNKLLP RERIDRLLDP GSSFLELSQL AGHELYEEPL  60
   61 PSGGIITGIG PIHGRICMFM ANDPTVKGGT YYPITIKKHL RAQEIAARCR LPCIYLVDSG 120
  121 GAYLPKQAEV FPDKENFGRV FYNESVMSSD GIPQIAIVLG SCTAGGAYIP AMADESVMVK 180
  181 GNGTIFLAGP PLVKAATGEE VSAEDLGGAT VHCTVSGVSD YFAQDELHGL AIGRNIVKNL 240
  241 HMAAKQGMEG TFGSKNLVYK EPLYDINELR SIAPVDHKQQ FDVRSIIARI VDGSEFDEFK 300
  301 KQYGTTLVTG FARIYGQTVG IIGNNGILFN ESALKGAHFI ELCSQRKIPL VFLQNITGFM 360
  361 VGSRAEANGI AKAGAKMVMA VSCAKVPKIT IITGASFGAG NYAMCGRAYS PDFMFIWPNA 420
  421 RIGIMGGAQA AGVLTQIERA TKKRQGIKWT EEEEEAFKKK TVDAYEREAN PYYSTARLWD 480
  481 DGVIDPCDTR KVLGLCLSAA LNRPLEDTRF GVFRM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 143.0
Match: 1vrgA
Description: Crystal structure of propionyl-CoA carboxylase, beta subunit (TM0716) from THERMOTOGA MARITIMA at 2.30 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
CoA carboxylase activity 4.38629333084302 bayes_pls_golite062009
acetyl-CoA carboxylase activity 4.36332808516753 bayes_pls_golite062009
ligase activity, forming carbon-carbon bonds 4.29345455730254 bayes_pls_golite062009
enoyl-CoA hydratase activity 3.92947460544831 bayes_pls_golite062009
methylcrotonoyl-CoA carboxylase activity 2.85169024122548 bayes_pls_golite062009
3-hydroxyacyl-CoA dehydrogenase activity 2.44182589784656 bayes_pls_golite062009
dodecenoyl-CoA delta-isomerase activity 1.80820904754223 bayes_pls_golite062009
catalytic activity 1.46154163027498 bayes_pls_golite062009
propionyl-CoA carboxylase activity 1.20853698666984 bayes_pls_golite062009
ligase activity 0.98581896521131 bayes_pls_golite062009
binding 0.578223105269736 bayes_pls_golite062009
3-hydroxybutyryl-CoA epimerase activity 0.241955774397835 bayes_pls_golite062009
racemase and epimerase activity, acting on hydroxy acids and derivatives 0.099208209617217 bayes_pls_golite062009
intramolecular oxidoreductase activity, transposing C=C bonds 0.0918189681606029 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle