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View Structure Prediction Details

Protein: IMDH2_ARATH
Organism: Arabidopsis thaliana
Length: 502 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IMDH2_ARATH.

Description E-value Query
Range
Subject
Range
gi|20807078, gi|... - gi|20807078|ref|NP_622249.1| IMP dehydrogenase/GMP reductase [Thermoanaerobacter tengcongensis MB4],...
gi|20807078 - gi|20807078|ref|NP_622249.1| IMP dehydrogenase/GMP reductase [Thermoanaerobacter tengcongensis MB4]
448.0 [0..11] [502..1]

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Predicted Domain #1
Region A:
Residues: [1-502]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGFEDGFSA EKLFSQGYSY TYDDVIFLPH FIDFSTDAVS LSTRLSKRVP LSIPCVASPM  60
   61 DTVSESHMAA AMAALGGIGI VHYNCDIDTQ ASVIRHAKSL QVPIASDAVF KCPEHQIGSV 120
  121 DDFGPSSFVF VSQTGTLTPK LLGYVSKSEW SSMKDDQKEV KIYDYMKSCE NKDYYVPWDI 180
  181 DLDKIEAVLE DKQKGFVVLE KEGETVNVVT KDDVERVKGY PKLGSGTVGA DKKWMVGAAI 240
  241 GTRESDKERL EHLVKAGANV VVLDSSQGNS IYQLEMIKYV KNTYPELDVV GGNVVTMYQA 300
  301 ENLIKAGVDG LRVGMGSGSI CTTQEVCAVG RGQATAVYKV STLAAQHGVP VIADGGISNS 360
  361 GHIVKALVLG ASTVMMGSFL AGSTEAPGAY EYRNGRRVKK YRGMGSLEAM TKGSDQRYLG 420
  421 DTAKLKIAQG VVGAVADKGS VLKFIPYTMH AVKQGFQDLG ASSLQSAHEL LRDNTLRLEA 480
  481 RTGAAQIEGG IHGLVSYEKK SF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 107.0
Match: 1b3oA
Description: Inosine monophosphate dehydrogenase (IMPDH)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
IMP dehydrogenase activity 2.02048863053452 bayes_pls_golite062009
binding 0.964202692685807 bayes_pls_golite062009
transporter activity 0.961062314616209 bayes_pls_golite062009
transmembrane transporter activity 0.807029018941177 bayes_pls_golite062009
substrate-specific transporter activity 0.640881170978843 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 0.525366315833255 bayes_pls_golite062009
ion transmembrane transporter activity 0.440262824681055 bayes_pls_golite062009
protein binding 0.22179604283012 bayes_pls_golite062009
catalytic activity 0.181756622780318 bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity 0.0973526732376297 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle