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View Structure Prediction Details

Protein: CYC2_ARATH
Organism: Arabidopsis thaliana
Length: 112 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CYC2_ARATH.

Description E-value Query
Range
Subject
Range
CYC_DANRE - Cytochrome c OS=Danio rerio GN=cyc PE=3 SV=3
152.0 [0..10] [112..2]

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Predicted Domain #1
Region A:
Residues: [1-112]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASFDEAPPG NPKAGEKIFR TKCAQCHTVE KGAGHKQGPN LNGLFGRQSG TTPGYSYSAA  60
   61 NKSMAVNWEE KTLYDYLLNP KKYIPGTKMV FPGLKKPQDR ADLIAYLKEG TA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 35.09691
Match: 1ccrA
Description: STRUCTURE OF RICE FERRICYTOCHROME C AT 2.0 ANGSTROMS RESOLUTION
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor 7.77694826742571 bayes_pls_golite062009
ubiquinol-cytochrome-c reductase activity 7.77694826742571 bayes_pls_golite062009
electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity 5.3228546115966 bayes_pls_golite062009
electron transporter, transferring electrons from CoQH2-cytochrome c reductase complex and cytochrome c oxidase complex activity 4.97969104367667 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 4.83198573144889 bayes_pls_golite062009
oxidoreductase activity 4.80453374142732 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 4.69221581420605 bayes_pls_golite062009
electron carrier activity 4.50051625202265 bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors 4.39250939893637 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 4.11195915185456 bayes_pls_golite062009
phosphoprotein phosphatase activity 3.07137767450073 bayes_pls_golite062009
protein serine/threonine phosphatase activity 3.05900853572871 bayes_pls_golite062009
oxidoreductase activity, acting on peroxide as acceptor 2.75675744166378 bayes_pls_golite062009
peroxidase activity 2.75675744166378 bayes_pls_golite062009
antioxidant activity 2.60087791856484 bayes_pls_golite062009
phosphatase activity 2.58257339159796 bayes_pls_golite062009
phosphoric ester hydrolase activity 2.48742191899955 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 1.67966224915812 bayes_pls_golite062009
binding 1.60003804759784 bayes_pls_golite062009
transporter activity 1.44083733311658 bayes_pls_golite062009
protein binding 1.33090393131805 bayes_pls_golite062009
transmembrane transporter activity 1.28161778948702 bayes_pls_golite062009
substrate-specific transporter activity 1.15573917988688 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 1.01443199299167 bayes_pls_golite062009
ion transmembrane transporter activity 0.881486298760893 bayes_pls_golite062009
cation transmembrane transporter activity 0.783993292151034 bayes_pls_golite062009
hydrolase activity 0.624991704964657 bayes_pls_golite062009

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