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View Structure Prediction Details

Protein: CE36100
Organism: Caenorhabditis elegans
Length: 451 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE36100.

Description E-value Query
Range
Subject
Range
gi|28204552, gi|... - gi|28212109|ref|NP_783053.1| methionine gamma-lyase [Clostridium tetani E88], gi|28204552|gb|AAO3699...
415.0 [0..60] [451..4]

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Predicted Domain #1
Region A:
Residues: [1-451]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRTDNLSDL ASARDYWRTD KYISFVITFQ FYLLLDTMSD SFNWPAGNNE ARERLGEKFE  60
   61 SLHLDSRIST SHAKPLSNAD PVVVPIYHSS TYRFKTVDQF NEDNHGANFV YRRCGNPTTE 120
  121 NVEVVINEIE GGAGSLLYNS GLAAISAVFL EFLSSGAHMI VMNPIYSGTS SFINETLARF 180
  181 GVEITSVDVE KEKDFAGAVE KAIRPNTKMI YFESIANPTM AVPDILGTIE VAKKYKILTC 240
  241 LDATFSSPYN IQPLKLGADI SLHSCSKYIG GHTDVIAGVV TVSSYDNWKK LKLQQLTTGS 300
  301 SLSPYDAALL TRGLKTLGLR VDRISENAQK TAEFLESHPK VERVFYPGLP SHPQHQYAKQ 360
  361 VMKQFAGMIA FDVGTAENAI KLVESLKLII HAVSLGGTES LIEHPLSMSH GKHLLRYLDG 420
  421 PTVAPGLLRF SVGIENVEDI IGDLNDALEK L

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 109.0
Match: 1y4iA
Description: Crystal structure of Citrobacter Freundii L-methionine-lyase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor 2.82824364293374 bayes_pls_golite062009
glycine dehydrogenase (decarboxylating) activity 2.82824364293374 bayes_pls_golite062009
catalytic activity 2.29878871754893 bayes_pls_golite062009
L-aspartate:2-oxoglutarate aminotransferase activity 1.87460342369605 bayes_pls_golite062009
transcription regulator activity 1.67701710033155 bayes_pls_golite062009
DNA binding 1.4774443071095 bayes_pls_golite062009
transferase activity 1.44093490824786 bayes_pls_golite062009
nucleic acid binding 1.39741122443159 bayes_pls_golite062009
transferase activity, transferring nitrogenous groups 1.28316822767388 bayes_pls_golite062009
transaminase activity 1.24990480711889 bayes_pls_golite062009
transcription factor activity 1.15775909410582 bayes_pls_golite062009
binding 1.09053123792737 bayes_pls_golite062009
O-phospho-L-serine:2-oxoglutarate aminotransferase activity 0.994935084630764 bayes_pls_golite062009
ligase activity 0.827063849687833 bayes_pls_golite062009
carbon-sulfur lyase activity 0.698312655247044 bayes_pls_golite062009
cystathionine beta-lyase activity 0.6849039330512 bayes_pls_golite062009
vitamin binding 0.66463470119531 bayes_pls_golite062009
cystathionine gamma-lyase activity 0.505859361763689 bayes_pls_golite062009
alanine-glyoxylate transaminase activity 0.48682493494502 bayes_pls_golite062009
O-acyltransferase activity 0.452440867878365 bayes_pls_golite062009
cysteine synthase activity 0.417849187928985 bayes_pls_golite062009
structural molecule activity 0.347975812448725 bayes_pls_golite062009
glycine hydroxymethyltransferase activity 0.271623203801431 bayes_pls_golite062009
pyridoxal phosphate binding 0.16957228630576 bayes_pls_golite062009
vitamin B6 binding 0.16957228630576 bayes_pls_golite062009
adenosylmethionine-8-amino-7-oxononanoate transaminase activity 0.0669652799570574 bayes_pls_golite062009

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