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View Structure Prediction Details

Protein: ceh-18
Organism: Caenorhabditis elegans
Length: 417 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ceh-18.

Description E-value Query
Range
Subject
Range
ceh-18 - status:Partially_confirmed UniProt:Q8MPS1 protein_id:AAM69077.1
276.0 [0..1] [410..1]

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Predicted Domain #1
Region A:
Residues: [1-220]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTLENTFQF LAEVFEANGG CLVTERVSPS LSGASKRKSR PVKRIITEDE VIPEEEVVEE  60
   61 EEEEKVEQPS EEVTCPAMQV DATDAILASL RQIANNDLSE HCIREDEGNT SAEVFSNGNG 120
  121 EDMEQAGLAG TDLLRRVADM LQGNHNGSLN SHFLQQQFAA FKVDPTPVST NGNGLLTPIT 180
  181 TQLSPLFTST DAFNSPEKLL QAIMTPSLGF LGANGLGKKH 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.69897
Match: 1m2vB
Description: Sec24
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [221-311]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ILKIKFYWVI SGASNSGLLS SPLIAPSPTL LQSLMNTPTQ PTASLTPKKA ENRPPVVSQT  60
   61 LKASKRRLFD DTSRIEAASM SGDDRIDMNE L

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [312-417]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EAFAQTFKKQ RIKFGFTQGD VGVALGKRYG TDFSQTTISR FEALNLSFKN MCKLRPLLKE  60
   61 WLADVEMAIE GGATVTDLID KKTIHNGNHH TIHHVDVSSL NFRVIT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 35.39794
Match: 1cqtA
Description: Oct-1 POU Homeodomain; Oct-1
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle