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View Structure Prediction Details

Protein: ceh-18
Organism: Caenorhabditis elegans
Length: 417 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ceh-18.

Description E-value Query
Range
Subject
Range
ceh-18 - status:Partially_confirmed UniProt:Q8MPS1 protein_id:AAM69077.1
276.0 [0..1] [410..1]

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Predicted Domain #1
Region A:
Residues: [1-220]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTLENTFQF LAEVFEANGG CLVTERVSPS LSGASKRKSR PVKRIITEDE VIPEEEVVEE  60
   61 EEEEKVEQPS EEVTCPAMQV DATDAILASL RQIANNDLSE HCIREDEGNT SAEVFSNGNG 120
  121 EDMEQAGLAG TDLLRRVADM LQGNHNGSLN SHFLQQQFAA FKVDPTPVST NGNGLLTPIT 180
  181 TQLSPLFTST DAFNSPEKLL QAIMTPSLGF LGANGLGKKH 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.69897
Match: 1m2vB
Description: Sec24
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [221-311]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ILKIKFYWVI SGASNSGLLS SPLIAPSPTL LQSLMNTPTQ PTASLTPKKA ENRPPVVSQT  60
   61 LKASKRRLFD DTSRIEAASM SGDDRIDMNE L

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [312-417]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EAFAQTFKKQ RIKFGFTQGD VGVALGKRYG TDFSQTTISR FEALNLSFKN MCKLRPLLKE  60
   61 WLADVEMAIE GGATVTDLID KKTIHNGNHH TIHHVDVSSL NFRVIT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 35.39794
Match: 1cqtA
Description: Oct-1 POU Homeodomain; Oct-1
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle