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View Structure Prediction Details

Protein: atf-7
Organism: Caenorhabditis elegans
Length: 509 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for atf-7.

Description E-value Query
Range
Subject
Range
atf-7 - status:Confirmed UniProt:Q17801 protein_id:CAA83680.1
249.0 [0..64] [509..15]

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Predicted Domain #1
Region A:
Residues: [1-76]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTMMTSSA SPPESGELDV ASAVASAAAA LISPMVMPTS MTNGKDMTKT SQILNEYFNM  60
   61 MVGKRVQLMG DTTSPF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [77-300]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLDTPNPKLM FTPLDLPTTA ELMQRCLAVN PFEAKFREAN QKISSGSMQP NTSGANQSLE  60
   61 ALEANGGSQF SGSNAGTMSD LLLKIPQASL QHSPGIFSNM LLNAGDSEGT TRENLKTADI 120
  121 SKLLSVAGDF SAQAPRTADV LNAVLDMHSD RLHTINYLNN KPDFSALLRS PSSSAPNSAS 180
  181 VLTNAMAIPS TSGAPFPGTT LLVPPKTVSS YHSPLGASSQ PPST

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [301-383]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QKSPADGSWD HINGEKQIKK EIPYFNDDAM MLMERSNMSS SGSDQDQSAD MSNAGSTAST  60
   61 STGNPVGRPQ NGTPGRGRGR GRS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [384-509]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTADMQPDER RNTILERNKA AAVRYRKRKK EEHDDMMGRV QAMEAEKNQL LAIQTQNQVL  60
   61 RRELERVTAL LTERESRCVC LKGVPMSDEQ HADHHHRNTN GMYSGSDMLN GLGQINGMQL 120
  121 KLPKLQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.30103
Match: 1t2kD
Description: Structure Of The DNA Binding Domains Of IRF3, ATF-2 and Jun Bound To DNA
Matching Structure (courtesy of the PDB):

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Created and Maintained by: Michael Riffle