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View Structure Prediction Details

Protein: atf-7
Organism: Caenorhabditis elegans
Length: 509 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for atf-7.

Description E-value Query
Range
Subject
Range
atf-7 - status:Confirmed UniProt:Q17801 protein_id:CAA83680.1
249.0 [0..64] [509..15]

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Predicted Domain #1
Region A:
Residues: [1-76]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTMMTSSA SPPESGELDV ASAVASAAAA LISPMVMPTS MTNGKDMTKT SQILNEYFNM  60
   61 MVGKRVQLMG DTTSPF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [77-300]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLDTPNPKLM FTPLDLPTTA ELMQRCLAVN PFEAKFREAN QKISSGSMQP NTSGANQSLE  60
   61 ALEANGGSQF SGSNAGTMSD LLLKIPQASL QHSPGIFSNM LLNAGDSEGT TRENLKTADI 120
  121 SKLLSVAGDF SAQAPRTADV LNAVLDMHSD RLHTINYLNN KPDFSALLRS PSSSAPNSAS 180
  181 VLTNAMAIPS TSGAPFPGTT LLVPPKTVSS YHSPLGASSQ PPST

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [301-383]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QKSPADGSWD HINGEKQIKK EIPYFNDDAM MLMERSNMSS SGSDQDQSAD MSNAGSTAST  60
   61 STGNPVGRPQ NGTPGRGRGR GRS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [384-509]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTADMQPDER RNTILERNKA AAVRYRKRKK EEHDDMMGRV QAMEAEKNQL LAIQTQNQVL  60
   61 RRELERVTAL LTERESRCVC LKGVPMSDEQ HADHHHRNTN GMYSGSDMLN GLGQINGMQL 120
  121 KLPKLQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.30103
Match: 1t2kD
Description: Structure Of The DNA Binding Domains Of IRF3, ATF-2 and Jun Bound To DNA
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle