| Protein: | tbx-7 |
| Organism: | Caenorhabditis elegans |
| Length: | 327 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tbx-7.
| Description | E-value | Query Range |
Subject Range |
|
|
331.0 | [0..16] | [319..305] |
|
Region A: Residues: [1-250] |
1 11 21 31 41 51
| | | | | |
1 MSEGYGRSLF SEKHFPHDRQ LLPPFTTTMS LGSFFSFPAS SAFFDRKKDD GVIDNPNVEL 60
61 VNRNLWSTFL ECGTEMIITK KGRRMFPLVK LKLSGLDKNS NYTIIMEMIS VDKLRYKFWN 120
121 GNWIVAGVGE HHPLPTCFVH PQSPRSGEWW MTDGVDFKMA KLSNNPFNND GHIVLNSMHR 180
181 YNPRFHIVRA DSSGQPILAS LKTFSFKETE FIAVTAYQND VVTKCKIDNN PFAKGFRNID 240
241 TVRKRKMNQI
|
| Detection Method: |  |
| Confidence: | 80.69897 |
| Match: | 1h6fA |
| Description: | T-box protein 3, tbx3 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 3.82913410895101 | bayes_pls_golite062009 |
| DNA binding | 3.66817147088612 | bayes_pls_golite062009 |
| transcription regulator activity | 3.64801189357929 | bayes_pls_golite062009 |
| nucleic acid binding | 3.4281783503437 | bayes_pls_golite062009 |
| transcription factor activity | 3.00834358271623 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.78676291654359 | bayes_pls_golite062009 |
| protein binding | 2.61625563263605 | bayes_pls_golite062009 |
| transcription activator activity | 2.550621891551 | bayes_pls_golite062009 |
| DNA strand annealing activity | 1.17814334604363 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.03496325074066 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.90477390899557 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.67715424282347 | bayes_pls_golite062009 |
| chromatin binding | 0.34201146905158 | bayes_pls_golite062009 |
| transcription repressor activity | 0.21694638611622 | bayes_pls_golite062009 |
| protein dimerization activity | 0.0889583851427092 | bayes_pls_golite062009 |
|
Region A: Residues: [251-327] |
1 11 21 31 41 51
| | | | | |
1 ISTPPASEDE EPEVKRTKSE IEAVMFSDPK VPQMSLQLIS QWQEALLSTI VQIPITNQKS 60
61 SSERKSGFGV VDLLGSS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
