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View Structure Prediction Details

Protein: CE30601
Organism: Caenorhabditis elegans
Length: 618 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE30601.

Description E-value Query
Range
Subject
Range
gi|39594096, gi|... - gi|39594096|emb|CAE70206.1| Hypothetical protein CBG16681 [Caenorhabditis briggsae], gi|187026455|em...
gi|157774995 - gi|157774995|ref|XP_001665563.1| hypothetical protein CBG16681 [Caenorhabditis briggsae AF16]
494.0 [0..1] [618..1]

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Predicted Domain #1
Region A:
Residues: [1-140]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMFDRRFFAL VVLLCVSAVR STEDASDDEL NYEMDEGVVV LTDKNFDAFL KKNPSVLVKF  60
   61 YAPWCGHCKH LAPEYEKASS KVSIPLAKVD ATVETELGKR FEIQGYPTLK FWKDGKGPND 120
  121 YDGGRDEAGI VEWVESRVDP 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 29.221849
Match: 1mekA
Description: HUMAN PROTEIN DISULFIDE ISOMERASE, NMR, 40 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
protein disulfide isomerase activity 4.54149370439152 bayes_pls_golite062009
intramolecular oxidoreductase activity, transposing S-S bonds 4.54149370439152 bayes_pls_golite062009
intramolecular oxidoreductase activity, interconverting keto- and enol-groups 4.32416700334664 bayes_pls_golite062009
peptidyl-proline 4-dioxygenase activity 3.90122473218664 bayes_pls_golite062009
procollagen-proline 4-dioxygenase activity 3.90122473218664 bayes_pls_golite062009
peptidyl-proline dioxygenase activity 3.90122473218664 bayes_pls_golite062009
procollagen-proline dioxygenase activity 3.90122473218664 bayes_pls_golite062009
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors 2.13527344103164 bayes_pls_golite062009
antioxidant activity 1.38472228155226 bayes_pls_golite062009
peroxidase activity 1.23048224324129 bayes_pls_golite062009
oxidoreductase activity, acting on peroxide as acceptor 1.23048224324129 bayes_pls_golite062009
protein binding 1.18479617596618 bayes_pls_golite062009
molecular transducer activity 1.11518182894524 bayes_pls_golite062009
signal transducer activity 1.11518182894524 bayes_pls_golite062009
disulfide oxidoreductase activity 1.07184913651636 bayes_pls_golite062009
binding 0.828696005067827 bayes_pls_golite062009
catalytic activity 0.672192331361968 bayes_pls_golite062009
glutathione peroxidase activity 0.527635650858282 bayes_pls_golite062009
protein disulfide oxidoreductase activity 0.44918717550973 bayes_pls_golite062009
peroxiredoxin activity 0.366096607480921 bayes_pls_golite062009
thioredoxin peroxidase activity 0.163136748643487 bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors 0.0409648030371754 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [141-618]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NYKPPPEEVV TLTTENFDDF ISNNELVLVE FYAPWCGHCK KLAPEYEKAA QKLKAQGSKV  60
   61 KLGKVDATIE KDLGTKYGVS GYPTMKIIRN GRRFDYNGPR EAAGIIKYMT DQSKPAAKKL 120
  121 PKLKDVERFM SKDDVTIIGF FATEDSTAFE AFSDSAEMLR EEFKTMGHTS DPAAFKKWDA 180
  181 KPNDIIIFYP SLFHSKFEPK SRTYNKAAAT SEDLLAFFRE HSAPLVGKMT KKNAATRYTK 240
  241 KPLVVVYYNA DFSVQYREGS EYWRSKVLNI AQKYQKDKYK FAVADEEEFA KELEELGLGD 300
  301 SGLEHNVVVF GYDGKKYPMN PDEFDGELDE NLEAFMKQIS SGKAKAHVKS APAPKDDKGP 360
  361 VKTVVGSNFD KIVNDESKDV LIEFYAPWCG HCKSFESKYV ELAQALKKTQ PNVVLAKMDA 420
  421 TINDAPSQFA VEGFPTIYFA PAGKKSEPIK YSGNRDLEDL KKFMTKHGVK SFQKKDEL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 69.39794
Match: 2b5eA
Description: Crystal Structure of Yeast Protein Disulfide Isomerase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle