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View Structure Prediction Details

Protein: atf-7
Organism: Caenorhabditis elegans
Length: 460 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for atf-7.

Description E-value Query
Range
Subject
Range
atf-7 - bZIP transcription factor status:Confirmed UniProt:Q9U3R1 protein_id:CAB63430.2
239.0 [0..1] [460..1]

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Predicted Domain #1
Region A:
Residues: [1-219]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVVTTTSMQ SDSKKRVQLM GDTTSPFSLD TPNPKLMFTP LDLPTTAELM QRCLAVNPFE  60
   61 AKFREANQKI SSGSMQPNTS GANQSLEALE ANGGSQFSGS NAGTMSDLLL KIPQASLQHS 120
  121 PGIFSNMLLN AGDSEGTTRE NLKTADISKL LSVAGDFSAQ APRTADVLNA VLDMHSDRLH 180
  181 TINYLNNKPD FSALLRSPSS SAPNSASVLT NAMAIPSTS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [220-333]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAPFPGTTLL VPPKTVSSYH SPLGASSQPP STQKSPADGS WDHINGEKQI KKEIPYFNDD  60
   61 AMMLMERSNM SSSGSDQDQS ADMSNAGSTA STSTGNPVGR PQNGTPGRGR GRGR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [334-460]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STTADMQPDE RRNTILERNK AAAVRYRKRK KEEHDDMMGR VQAMEAEKNQ LLAIQTQNQV  60
   61 LRRELERVTA LLTERESRCV CLKGVPMSDE QHADHHHRNT NGMYSGSDML NGLGQINGMQ 120
  121 LKLPKLQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.0
Match: 1t2kD
Description: Structure Of The DNA Binding Domains Of IRF3, ATF-2 and Jun Bound To DNA
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle