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View Structure Prediction Details

Protein: atf-7
Organism: Caenorhabditis elegans
Length: 460 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for atf-7.

Description E-value Query
Range
Subject
Range
atf-7 - bZIP transcription factor status:Confirmed UniProt:Q9U3R1 protein_id:CAB63430.2
239.0 [0..1] [460..1]

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Predicted Domain #1
Region A:
Residues: [1-219]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVVTTTSMQ SDSKKRVQLM GDTTSPFSLD TPNPKLMFTP LDLPTTAELM QRCLAVNPFE  60
   61 AKFREANQKI SSGSMQPNTS GANQSLEALE ANGGSQFSGS NAGTMSDLLL KIPQASLQHS 120
  121 PGIFSNMLLN AGDSEGTTRE NLKTADISKL LSVAGDFSAQ APRTADVLNA VLDMHSDRLH 180
  181 TINYLNNKPD FSALLRSPSS SAPNSASVLT NAMAIPSTS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [220-333]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAPFPGTTLL VPPKTVSSYH SPLGASSQPP STQKSPADGS WDHINGEKQI KKEIPYFNDD  60
   61 AMMLMERSNM SSSGSDQDQS ADMSNAGSTA STSTGNPVGR PQNGTPGRGR GRGR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [334-460]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STTADMQPDE RRNTILERNK AAAVRYRKRK KEEHDDMMGR VQAMEAEKNQ LLAIQTQNQV  60
   61 LRRELERVTA LLTERESRCV CLKGVPMSDE QHADHHHRNT NGMYSGSDML NGLGQINGMQ 120
  121 LKLPKLQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.0
Match: 1t2kD
Description: Structure Of The DNA Binding Domains Of IRF3, ATF-2 and Jun Bound To DNA
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle