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View Structure Prediction Details

Protein: cyn-12
Organism: Caenorhabditis elegans
Length: 169 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cyn-12.

Description E-value Query
Range		 Subject
Range
gi|50301248 - gi|50301248|gb|AAT73777.1| TRIM5/cyclophilin A fusion protein [Aotus trivirgatus]
 237.0 [0..3] [163..307]
gi|157756359 - gi|157756359|ref|XP_001670523.1| Hypothetical protein CBG05777 [Caenorhabditis briggsae AF16]
gi|39593518, gi|... - gi|39593518|emb|CAE61810.1| Hypothetical protein CBG05777 [Caenorhabditis briggsae], gi|187034726|em...
 230.0 [0..1] [169..1]
CPY71_ARATH - Peptidyl-prolyl cis-trans isomerase CYP71 OS=Arabidopsis thaliana GN=CYP71 PE=1 SV=1
 227.0 [0..12] [165..478]
gi|50948445, gi|... - gi|50948445|ref|XP_483750.1| putative cyclophilin (70.8 kD) (cyp-15) [Oryza sativa (japonica cultiva...
 227.0 [0..13] [165..271]
gi|114683679, gi... - gi|114683681|ref|XP_001156644.1| PREDICTED: similar to peptidylprolyl isomerase isoform 1 [Pan trogl...
 225.0 [0..9] [164..3]
gi|37788308 - gi|37788308|gb|AAP44535.1| cyclophilin-like protein [Triticum aestivum]
 223.0 [0..2] [165..70]
PPIA - peptidylprolyl isomerase A (cyclophilin A)
PPIA_CERAE - (P62938) Peptidyl-prolyl cis-trans isomerase A (EC 5.2.1.8) (PPIase A) (Rotamase A) (Cyclophilin A) ...
PPIA_PAPAN - (P62941) Peptidyl-prolyl cis-trans isomerase A (EC 5.2.1.8) (PPIase A) (Rotamase A) (Cyclophilin A) ...
PPIA_MACMU - (P62940) Peptidyl-prolyl cis-trans isomerase A (EC 5.2.1.8) (PPIase A) (Rotamase A) (Cyclophilin A) ...
 223.0 [0..9] [164..2]

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Predicted Domain #1
Region A:
Residues: [1-169] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAPINDQAP YVILDTTMGK IALELYWNHA PRTCQNFSQL AKRNYYNGTI FHRIIADFMI  60
   61 QGGDPTGTGR GGASIYGDKF SDEIDERLKH TGAGILSMAN AGPNTNGSQF FITLAPTQHL 120
  121 DGKHTIFGRV AAGMKVIANM GRVDTDNHDR PKIEIRILKA YPSESSVLS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 54.69897
Match: 1xwnA
Description: solution structure of cyclophilin like 1(PPIL1) and insights into its interaction with SKIP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
protein deacetylase activity 4.3775483906311 bayes_pls_golite062009
histone deacetylase activity 4.29026678196473 bayes_pls_golite062009
peptidyl-prolyl cis-trans isomerase activity 3.73853378771688 bayes_pls_golite062009
cis-trans isomerase activity 3.66963215732405 bayes_pls_golite062009
deacetylase activity 3.49940864924766 bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides 3.01511519120932 bayes_pls_golite062009
RNA binding 2.94609837984526 bayes_pls_golite062009
isomerase activity 1.96529188741504 bayes_pls_golite062009
binding 1.46018233647024 bayes_pls_golite062009
mRNA binding 1.45537055700871 bayes_pls_golite062009
unfolded protein binding 1.38124355054041 bayes_pls_golite062009
nucleic acid binding 0.939772862764466 bayes_pls_golite062009
catalytic activity 0.748655649755714 bayes_pls_golite062009
hydrolase activity 0.493806105600863 bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds 0.408539130322443 bayes_pls_golite062009
ubiquitin-protein ligase activity 0.322244688184474 bayes_pls_golite062009
small conjugating protein ligase activity 0.286133802341887 bayes_pls_golite062009
histone binding 0.268719695649015 bayes_pls_golite062009
protein binding 0.130251391659493 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle