| Protein: | prp-21 |
| Organism: | Caenorhabditis elegans |
| Length: | 655 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for prp-21.
| Description | E-value | Query Range |
Subject Range |
|
|
644.0 | [0..21] | [655..1] |
|
Region A: Residues: [1-110] |
1 11 21 31 41 51
| | | | | |
1 MTAVVSNREE DSMNNEPSLS GRAIIGLIYP PPDIRTIVDK TARFAAKNGV DFENKIREKE 60
61 AKNPKFNFLS ITDPYHAYYK KMVYDFSEGR VEAPKVPQAV KEHVKKAEFV
|
| Detection Method: |  |
| Confidence: | 21.39794 |
| Match: | 2dt6A |
| Description: | No description for 2dt6A was found. |
|
Region A: Residues: [111-201] |
1 11 21 31 41 51
| | | | | |
1 PSAPPPAYEF SADPSTINAY DLDLIRLVAL FVARNGRQFL TQLMTREARN YQFDFLKPAH 60
61 CNFTYFTKLV DQYQKVLVPS TNVVAQLQDD A
|
| Detection Method: | |
| Confidence: | 24.221849 |
| Match: | 2dt7B |
| Description: | No description for 2dt7B was found. |
|
Region A: Residues: [202-410] |
1 11 21 31 41 51
| | | | | |
1 TNKKRLIEDI NYRVSWEKHQ KGLKDREEAE AEKERQAYAS IDWHDFVVVQ TVDFQPGDTS 60
61 QLPPLCTPKD VGARILLEAR NEMQKAAAEM QEMDMEESDS DDEDAVQAPE APAFTAPLPP 120
121 TKQKDVIVRD YDPKRNVTQK PKAVENWIIS PLTGERIPSD KLAEHVRYNT VDSQYKEDRD 180
181 RHIGERSTEE PVLALGADIS RNLGNFAER
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [411-530] |
1 11 21 31 41 51
| | | | | |
1 RTDIFGVGGE QTMIGKKLGE EDNSQQGQNK LIWDGTEETR DMITRAVQNK VTLDQQINEI 60
61 HRQHGFVADP SKEKIGAQQV PRHQSTQGNV TITQGITNIP GQMPSGWPPV PPMGMPGMPN 120
121
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [531-655] |
1 11 21 31 41 51
| | | | | |
1 QALPPIRQMD FGGGPPAKRP RTEDDLIPEA DWLKKVNGAI SLNVHLPQAP EHGMDGSIVQ 60
61 FTIQVTAPMS ELKQQIQDRY GMPVGKQKLM SDGLFVKDNM SSAFYNLADR TAIYLQVKER 120
121 GGKKK
|
| Detection Method: | |
| Confidence: | 26.522879 |
| Match: | 1we7A |
| Description: | Solution structure of Ubiquitin-like domain in SF3a120 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 2.5865157751042 | bayes_pls_golite062009 |
| binding | 2.19381585790185 | bayes_pls_golite062009 |
| structural constituent of ribosome | 1.967509006593 | bayes_pls_golite062009 |
| protein binding | 1.89134588490127 | bayes_pls_golite062009 |
| structural molecule activity | 1.52853261170163 | bayes_pls_golite062009 |
| transcription regulator activity | 1.11533445164506 | bayes_pls_golite062009 |
| nucleic acid binding | 0.896431097217265 | bayes_pls_golite062009 |
| DNA binding | 0.859811565165317 | bayes_pls_golite062009 |
