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Protein Overview: prp-21

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run hcp-1 hcp1 IP from december2004 Cheeseman, I.M., et al. (2005)
View Run hcp-2 hcp2 ip from december Cheeseman, I.M., et al. (2005)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..110] PSI-BLAST 21.39794 No description for 2dt6A was found.
2 View Details [111..201] PSI-BLAST 24.221849 No description for 2dt7B was found.
3 View Details [202..410] MSA 1.059966 View MSA. No confident structure predictions are available.
4 View Details [411..530] MSA 1.037979 View MSA. No confident structure predictions are available.
5 View Details [531..655] PSI-BLAST 26.522879 Solution structure of Ubiquitin-like domain in SF3a120

Functions predicted (by domain):

# Gene Ontology predictions
1 No functions predicted.
2 No functions predicted.
3 No functions predicted.
4 No functions predicted.
5
Term Confidence Notes
  • RNA binding
  • 2.5865157751042 bayes_pls_golite062009
  • binding
  • 2.19381585790185 bayes_pls_golite062009
  • structural constituent of ribosome
  • 1.967509006593 bayes_pls_golite062009
  • protein binding
  • 1.89134588490127 bayes_pls_golite062009
  • structural molecule activity
  • 1.52853261170163 bayes_pls_golite062009
  • transcription regulator activity
  • 1.11533445164506 bayes_pls_golite062009
  • nucleic acid binding
  • 0.896431097217265 bayes_pls_golite062009
  • DNA binding
  • 0.859811565165317 bayes_pls_golite062009




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle