| Protein: | npp-18 |
| Organism: | Caenorhabditis elegans |
| Length: | 363 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for npp-18.
| Description | E-value | Query Range |
Subject Range |
|
|
339.0 | [0..1] | [360..1240] |
|
Region A: Residues: [1-363] |
1 11 21 31 41 51
| | | | | |
1 MQEDDSVKPF QTVGAHRDLI HCVSFDPHGR RMATCASDMT MAIWDRKPDG NWRRSAHWKC 60
61 HGGAVWRVIW AHPEFGQIVA TCSYDRTIVI WEEQIVRSEK DLKQKESQWI RRTIISDNRS 120
121 DVTDICFSPR HLGLMMASCN VLGTVRIYEA PDIVDASRWN LIHELQAFHT RCGCVTWSLS 180
181 RMHRPLIAVG SDEKKAENKK RVVIYENIDG LRKWQRINSL VFDLPCPITD LKFSPISMVD 240
241 SHQLAVASGD VHVYNIKVAR SAILEEDGVE NPIQLADYNL IKVALLGDHR KAWRLRYNLM 300
301 GSVISSTSLD GTLRSWKSLF VNQWVKLSEM NVDDYVPSPE EVRAFISSKT TERLPSQLEK 360
361 TYF
|
| Detection Method: |  |
| Confidence: | 61.154902 |
| Match: | 1vyhC |
| Description: | PAF-AH Holoenzyme: Lis1/Alfa2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.42570478946173 | bayes_pls_golite062009 |
| transcription regulator activity | 1.95667720244696 | bayes_pls_golite062009 |
| nucleic acid binding | 1.90457914882449 | bayes_pls_golite062009 |
| GTPase activity | 1.66665311782591 | bayes_pls_golite062009 |
| snoRNA binding | 1.61553185503007 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 1.59258100795958 | bayes_pls_golite062009 |
| DNA binding | 1.38475369554616 | bayes_pls_golite062009 |
| protein binding | 1.21879977456466 | bayes_pls_golite062009 |
| transporter activity | 1.21549336905926 | bayes_pls_golite062009 |
| protein transporter activity | 0.964340340346761 | bayes_pls_golite062009 |
| transcription factor activity | 0.804334981068351 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.734793983890004 | bayes_pls_golite062009 |
| structural molecule activity | 0.721739615005709 | bayes_pls_golite062009 |
| molecular transducer activity | 0.577438981735303 | bayes_pls_golite062009 |
| signal transducer activity | 0.577438981735303 | bayes_pls_golite062009 |
| transcription repressor activity | 0.560226369775279 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 0.535041400676017 | bayes_pls_golite062009 |
| 0.53274018413176 | bayes_pls_golite062009 | |
| transcription factor binding | 0.412844855996155 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.359536347486199 | bayes_pls_golite062009 |
| receptor activity | 0.322599767074871 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.19391619547146 | bayes_pls_golite062009 |
| hydrolase activity | 0.181211933860468 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 0.168317261786777 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.132660456600365 | bayes_pls_golite062009 |
| kinase activity | 0.127621956173205 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.00954741955203087 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.00585398682921312 | bayes_pls_golite062009 |
