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View Structure Prediction Details

Protein: CE16381
Organism: Caenorhabditis elegans
Length: 456 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE16381.

Description E-value Query
Range
Subject
Range
gi|91089229 - gi|91089229|ref|XP_968302.1| PREDICTED: similar to CG5304-PA [Tribolium castaneum]
263.0 [0..7] [453..577]

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Predicted Domain #1
Region A:
Residues: [1-456]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQTMSSRKV MVFVVTFVSY GLYHASRKAL SGVKSSIKAD WLSNSSGHAP LFTNEADAKH  60
   61 FLGSLDAIFM AAYAAALFFW GWLGDRLNPK LVVAAGMVGS AVTLTLFGAI PKWFNFYHAP 120
  121 YYIMTYVAFG LVQACGWPSE IAIMANWFGK GNRGFVMGVW AACQPVGNIF GSIFTAMVLP 180
  181 LGYQYTFVFN SVLIALGAIV VVMAIDSSPN EEHEDGVEAN SSEPHHNFHG EPISLFKAVL 240
  241 LPGVLAYCIC NACLKLVNYA FFFWLPLYLT DAYHWEESQA DQLSIWYDFG GIIGSVLGGY 300
  301 ITDKMGKRSP LIVAMLVCSI GSLYFYAHVG PHMFWNAVVM TTVGVTVSGP YNLIVGSISI 360
  361 DLGSQPALAG NTQAMSTVSG LLDGTGSAGS AVGQLLIPII QDDLGWKAVF YVFMLLNGFA 420
  421 ILAILKRCII DLKSLRKLRS GEESPLLNDE AGDHED

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 38.522879
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
glycerol-3-phosphate transmembrane transporter activity 6.64541562829047 bayes_pls_golite062009
glycerol transmembrane transporter activity 6.53545447445357 bayes_pls_golite062009
polyol transmembrane transporter activity 6.07447885476237 bayes_pls_golite062009
alcohol transmembrane transporter activity 6.07447885476237 bayes_pls_golite062009
transporter activity 2.54286095434601 bayes_pls_golite062009
transmembrane transporter activity 2.01247278444729 bayes_pls_golite062009
substrate-specific transporter activity 1.77039368764865 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 1.66673693200184 bayes_pls_golite062009
organophosphate:inorganic phosphate antiporter activity 0.796599261179881 bayes_pls_golite062009
glycerol-phosphate:inorganic phosphate antiporter activity 0.796599261179881 bayes_pls_golite062009
active transmembrane transporter activity 0.33203350453105 bayes_pls_golite062009
ion transmembrane transporter activity 0.18188709249385 bayes_pls_golite062009
binding 0.105551689569449 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle