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View Structure Prediction Details

Protein: CE13016
Organism: Caenorhabditis elegans
Length: 317 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE13016.

Description E-value Query
Range
Subject
Range
gi|87281645, gi|... - gi|87303848|ref|ZP_01086553.1| threonine dehydratase [Synechococcus sp. WH 5701], gi|87281645|gb|EAQ...
316.0 [0..1] [315..1]

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Predicted Domain #1
Region A:
Residues: [1-317]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTKITMEEM RAAYQRTAPF LHKTLVITSE NIDEKVGNGT HVLFKCEHLQ KTGSFKARGA  60
   61 LNSAILAKEK NAKGMIAHSS GNHGQALAWA AQKIGLPCTI VVPKNAPISK IEGMREYNAN 120
  121 IVFCEPTVTS RESVCADLTE KLEYYCVEPY NCVSMINGHS SVAFEILEQV GNEIDSIFLS 180
  181 VGGGGLASSV AFLIGNLRPD IEVYLVQPAQ KELSNFLENG IKCPVDTLDT IADGVRVARV 240
  241 GPLCEPILKQ YCAQKVISVK EDEIKEGLKL IWTRMKQRIE PTAALAFAGV LYHKPAHIKR 300
  301 PLVILCGGNV DTNYVIN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 68.154902
Match: 1v71A
Description: Crystal Structure of S.pombe Serine Racemase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
threonine racemase activity 4.44340924206787 bayes_pls_golite062009
threonine synthase activity 3.59927532963055 bayes_pls_golite062009
cysteine synthase activity 3.57860549303214 bayes_pls_golite062009
L-threonine ammonia-lyase activity 3.33109959091277 bayes_pls_golite062009
catalytic activity 2.38994231321972 bayes_pls_golite062009
tryptophan synthase activity 1.99526226543975 bayes_pls_golite062009
lyase activity 1.87743897464083 bayes_pls_golite062009
carbon-oxygen lyase activity 0.923824749425553 bayes_pls_golite062009
binding 0.557628798477604 bayes_pls_golite062009
ammonia-lyase activity 0.476674617721478 bayes_pls_golite062009
carbon-nitrogen lyase activity 0.249761226675912 bayes_pls_golite062009
protein binding 0.066947056585999 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle