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View Structure Prediction Details

Protein: CE12894
Organism: Caenorhabditis elegans
Length: 467 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE12894.

Description E-value Query
Range
Subject
Range
gi|157758729 - gi|157758729|ref|XP_001671708.1| Hypothetical protein CBG18478 [Caenorhabditis briggsae AF16]
gi|187024943, gi... - gi|39581329|emb|CAE71538.1| Hypothetical protein CBG18478 [Caenorhabditis briggsae], gi|187024943|em...
392.0 [0..1] [467..1]

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Predicted Domain #1
Region A:
Residues: [1-467]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTLVNALGF FTSSTPAAAA TKDVRSKEEI LKRRKDTIGS KCQIFYSDDP FMVSRASMQY  60
   61 LYDEKSNKFL DCISNVQHVG HCHPKVVEAI SKQLATSTCN VRFVSTQLTD CAEQILSTLP 120
  121 GLDTVLFCNS GSEANDLALR LARDYTKHKD AIVIEHAYHG HVTTTMELSP YKFDHGSTVS 180
  181 QPDWVHVAPC PDVFRGKHRL ADNELTNEDK LYAAGKQYSD DVKSILNDVE SRQCGVAAYF 240
  241 AEALQSCGGQ VIPPKDYFKD VATHVRNHGG LMIIDEVQTG FGRIGRKYWA HQLYDDGFLP 300
  301 DIVTMGKPMG NGFPVSAVAT RKEIADALGG EVGYFNTYGG NPVACAAVIS VMKVVKDENL 360
  361 LEHSQQMGEK LEVALRDLQK KHECIGDIRG VGLFWGIDLV KDRNTREPDQ KLAIATILAL 420
  421 RKSYGILLNA DGPHTNILKI KPPLCFNENN ILETVTALDQ VLTLMNR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 97.09691
Match: 1szkA
Description: The structure of gamma-aminobutyrate aminotransferase mutant: E211S
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
4-aminobutyrate transaminase activity 9.08769857759091 bayes_pls_golite062009
succinate-semialdehyde dehydrogenase binding 8.44659094913875 bayes_pls_golite062009
L-aspartate:2-oxoglutarate aminotransferase activity 3.359406422625 bayes_pls_golite062009
transferase activity 2.59075614411581 bayes_pls_golite062009
catalytic activity 2.29878871754893 bayes_pls_golite062009
5-aminolevulinate synthase activity 1.85905571238884 bayes_pls_golite062009
adenosylmethionine-8-amino-7-oxononanoate transaminase activity 1.74778109525713 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor 1.46601963907552 bayes_pls_golite062009
glycine dehydrogenase (decarboxylating) activity 1.46601963907552 bayes_pls_golite062009
N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity 1.4383564662931 bayes_pls_golite062009
glutamate decarboxylase activity 1.34215658716536 bayes_pls_golite062009
transferase activity, transferring nitrogenous groups 1.28316822767388 bayes_pls_golite062009
transaminase activity 1.24990480711889 bayes_pls_golite062009
transferase activity, transferring acyl groups 1.19150094103499 bayes_pls_golite062009
transcription regulator activity 0.977210827616757 bayes_pls_golite062009
nucleic acid binding 0.892872530648552 bayes_pls_golite062009
binding 0.892049641082766 bayes_pls_golite062009
ligase activity 0.827063849687833 bayes_pls_golite062009
DNA binding 0.803965264969424 bayes_pls_golite062009
kynureninase activity 0.777830972119923 bayes_pls_golite062009
carbon-sulfur lyase activity 0.698312655247044 bayes_pls_golite062009
intramolecular transferase activity, transferring amino groups 0.659071155545801 bayes_pls_golite062009
transcription factor activity 0.597417107954964 bayes_pls_golite062009
N-succinyltransferase activity 0.52897097514616 bayes_pls_golite062009
ornithine-oxo-acid transaminase activity 0.311107335626334 bayes_pls_golite062009
N-acyltransferase activity 0.2609065149092 bayes_pls_golite062009
pyridoxal phosphate binding 0.16957228630576 bayes_pls_golite062009
vitamin B6 binding 0.16957228630576 bayes_pls_golite062009
cystathionine beta-lyase activity 0.15938456446406 bayes_pls_golite062009
hydrolase activity 0.158765164178244 bayes_pls_golite062009
amine binding 0.14702601411039 bayes_pls_golite062009
methyltransferase activity 0.103986924428507 bayes_pls_golite062009
sulfurtransferase activity 0.0450490929307473 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 0.0254276656964899 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle