| Protein: | CE08817 |
| Organism: | Caenorhabditis elegans |
| Length: | 544 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE08817.
| Description | E-value | Query Range |
Subject Range |
|
|
604.0 | [0..5] | [542..3] |
|
Region A: Residues: [1-129] |
1 11 21 31 41 51
| | | | | |
1 MGGGKYETQM CVIIIEDIFG KIVAKVMETI LKESCQLSTL FYKLKGQISN TLIRKSVSTL 60
61 INFGFVTFHL DTNNRTTYVA DSDQIQHVIS SPRACLIAKT LYGPAAESIC VELISQGRLT 120
121 VSETIRRIQ
|
| Detection Method: |  |
| Confidence: | 21.522879 |
| Match: | PF08221.2 |
| Description: | No description for PF08221.2 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [130-291] |
1 11 21 31 41 51
| | | | | |
1 ATDETAVFSD IKKSFEELAA AHFLIRVPSV ESEIHGCPQF VTNFDPFAIS TNIMEKKEGT 60
61 STSDSTSNNR KRKADSTPED GDAGQYWRIN WIRFNGYLRD ELIIDYLIGG GSKGTMTNLN 120
121 VKKEETIEDP QGDRTQYITQ NVAHLMFKIN ETRAKPMSME SI
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [292-471] |
1 11 21 31 41 51
| | | | | |
1 TASLTDLQRL VKENGLNLAK PDIELACQIL VDESDGIIRK LGESNGGIFI VDIRRAIRQI 60
61 CRHHCESLIR EQFEGRAIRV MRLLENRHYL DEEQVEKLSM MSGKEAREML YALVEEGYVF 120
121 NKPVGRSNDF QPARTFYLYY VDLPRTIRGL VEYTCKLVRN LIVRQRHERT ENKSVLDKDA 180
181
|
| Detection Method: | |
| Confidence: | 4.0 |
| Match: | 1q1hA |
| Description: | An extended winged helix domain in general transcription factor E/IIE alpha |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.55329976718261 | bayes_pls_golite062009 |
| DNA binding | 5.08959163553491 | bayes_pls_golite062009 |
| nucleic acid binding | 4.99681957904233 | bayes_pls_golite062009 |
| RNA polymerase activity | 4.38040357248614 | bayes_pls_golite062009 |
| DNA-directed RNA polymerase activity | 4.38040357248614 | bayes_pls_golite062009 |
| transcription factor activity | 4.33152142980289 | bayes_pls_golite062009 |
| binding | 3.52874320222492 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 2.80876790343695 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.48053910222825 | bayes_pls_golite062009 |
| transcription activator activity | 2.37668609508629 | bayes_pls_golite062009 |
| transcription repressor activity | 2.22485867684613 | bayes_pls_golite062009 |
| transferase activity | 2.17455387041569 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 2.13327310661537 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.70025468248325 | bayes_pls_golite062009 |
| transcription factor binding | 0.85714789329232 | bayes_pls_golite062009 |
| protein binding | 0.753698599635855 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.461477365615935 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.0856082199488197 | bayes_pls_golite062009 |
|
Region A: Residues: [472-544] |
1 11 21 31 41 51
| | | | | |
1 NVQPIIENIR SSEQLDEASK LAQIAEVEEM YLPGPDRAQL NRFRKAQATL LAAQDQSIRV 60
61 LLSFKLFLAS GEN
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
