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View Structure Prediction Details

Protein: CE03794
Organism: Caenorhabditis elegans
Length: 522 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE03794.

Description E-value Query
Range
Subject
Range
AMPA_VIBVY - Probable cytosol aminopeptidase OS=Vibrio vulnificus (strain YJ016) GN=pepA PE=3 SV=1
AMPA_VIBVU - Probable cytosol aminopeptidase OS=Vibrio vulnificus GN=pepA PE=3 SV=1
AMPA_VIBVU - Probable cytosol aminopeptidase OS=Vibrio vulnificus (strain CMCP6) GN=pepA PE=3 SV=1
539.0 [0..9] [519..2]

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Predicted Domain #1
Region A:
Residues: [1-522]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLQSLLSTK IVRATSIADA AFDAVVLVGS QDNVQQFGAI QQVSAIAPAV NNFLKLHSGA  60
   61 FNSTSLVQVD SSVVPSGRLI LSGTGNVSRD YDDVRRYQAA ARKGISMALS AGVKSPLLIT 120
  121 LPNSRFPNAE LVAALGALTP VYTPLNVREE ENKQKLNQLG LLAIGNSDTS ARLEKLVEAY 180
  181 DASFTVCRDV GEAGPERMAP PRVAEYIQGA FANGNIKVTV VDDQSVILKD FPLMAAVNRA 240
  241 ANCVKEHQAR LIRLEYVGEG ETQDTFFVVG KGVTIDTGGC DLKTGGHMFG MCRDKYGSAV 300
  301 VGGFFKAIDV LKPKNIKAVG YMCMVRNSIG SHAYTCDEVI TSRSGKRIHI YNTDAEGRLT 360
  361 MLDPLTLAKE EALNAKNPHL FTVATLTGHE VLSYGYYAAI MDNGPAKASG WARRVQNVGD 420
  421 EFGQPIEISR LHPEDFAFHM AECEQADLRQ GNTKPSVATL RGHQTPAAFL QMASRIDEHG 480
  481 TNSSHPLKYS HIDMGGCSGD HPSVSFPNPL VTLVAGLVLP HV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 150.0
Match: 1gytA
Description: Leucine aminopeptidase, C-terminal domain; Leucine aminopeptidase (Aminopeptidase A), N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
peptidase activity 3.26568153906254 bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides 2.98334117181651 bayes_pls_golite062009
metallopeptidase activity 2.06343447704714 bayes_pls_golite062009
exopeptidase activity 1.5759162922092 bayes_pls_golite062009
carboxypeptidase activity 0.891655769761122 bayes_pls_golite062009
binding 0.719625404193588 bayes_pls_golite062009
metalloexopeptidase activity 0.472688733072762 bayes_pls_golite062009
hydrolase activity 0.367195794753195 bayes_pls_golite062009
metallocarboxypeptidase activity 0.180859448845431 bayes_pls_golite062009
catalytic activity 0.168716604730246 bayes_pls_golite062009
aminopeptidase activity 0.0966237570696103 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle