YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBP22H7.06
Organism:	Schizosaccharomyces pombe
Length:	230 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBP22H7.06.

Description	E-value	Query Range	Subject Range
gi\|76611769 - gi\|76611769\|ref\|XP_614178.2\| PREDICTED: similar to uridine-cytidine kinase 2 [Bos taurus]	176.0	[0..4]	[217..236]
CE20700 - status:Confirmed UniProt:Q9U3I7 protein_id:CAA93462.1	175.0	[0..3]	[223..102]
UCKB_DICDI - Uridine-cytidine kinase B OS=Dictyostelium discoideum GN=udkB PE=3 SV=2 gi\|60472219, gi\|... - gi\|66820973\|ref\|XP_644025.1\| uridine kinase [Dictyostelium discoideum AX4], gi\|60472219\|gb\|EAL70172....	173.0	[0..2]	[218..12]
gi\|21619828, gi\|... - gi\|21619828\|gb\|AAH33078.1\| UCKL1 protein [Homo sapiens], gi\|119595593\|gb\|EAW75187.1\| uridine-cytidin...	173.0	[0..2]	[209..95]
gi\|39585640, gi\|... - gi\|39585640\|emb\|CAE59842.1\| Hypothetical protein CBG03314 [Caenorhabditis briggsae], gi\|187036550\|em... gi\|157756767 - gi\|157756767\|ref\|XP_001670727.1\| Hypothetical protein CBG03314 [Caenorhabditis briggsae AF16]	173.0	[0..3]	[223..102]
gi\|109469352, gi... - gi\|109471464\|ref\|XP_001056276.1\| PREDICTED: similar to Uridine/cytidine kinase-like 1 isoform 1 [Rat...	173.0	[0..2]	[227..79]
gi\|68395641 - gi\|68395641\|ref\|XP_692049.1\| PREDICTED: similar to Uridine/cytidine kinase-like 1 [Danio rerio]	173.0	[0..3]	[227..90]
gi\|42407979, gi\|... - gi\|50947885\|ref\|XP_483470.1\| putative uridine kinase/uracil phosphoribosyltransferase [Oryza sativa ...	173.0	[0..2]	[207..68]

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Predicted Domain #1

Region A:
Residues: [1-230]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRKTIIVGV SGASCSGKST LCQLLHAIFE GSSLVHEDDF YKTDAEIPVK NGIADWDCQE  60
   61 SLNLDAFLEN LHYIRDHGVL PTHLRNRENK NVAPEALIEY ADIIKEFKAP AIPTLEQHLV 120
  121 FVDGFMMYVN EDLINAFDIR LMLVTDFDTL KRRREARTGY ITLEGFWQDP PHYFENYVWP 180
  181 GYVHGHSHLF VNGDVTGKLL DKRIQLSPSS KMSVRDNVQW AINSILNALQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.522879
Match:	1udwA
Description:	Crystal structure of human uridine-cytidine kinase 2 complexed with a feedback-inhibitor, CTP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.89648142312455	bayes_pls_golite062009
nucleic acid binding	1.08697924060619	bayes_pls_golite062009
catalytic activity	1.00104173493322	bayes_pls_golite062009
DNA binding	0.702147676354075	bayes_pls_golite062009
hydrogen ion transporting ATP synthase activity, rotational mechanism	0.351319981572451	bayes_pls_golite062009
transcription regulator activity	0.287777990975748	bayes_pls_golite062009
nucleobase, nucleoside, nucleotide kinase activity	0.12351419478929	bayes_pls_golite062009
helicase activity	0.0775311459068899	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: