| Protein: | air1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 313 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for air1.
| Description | E-value | Query Range |
Subject Range |
|
|
195.0 | [0..2] | [313..300] |
|
Region A: Residues: [1-86] |
1 11 21 31 41 51
| | | | | |
1 MTVSNQKAES DDGSDIDDAA LLQKINSLPI DQSITNSVSL EKHDFQGSDD HDSSTDLSDS 60
61 TLEDVEGSEW ADVSRGRYFG SDPSES
|
| Detection Method: |  |
| Confidence: | 14.221849 |
| Match: | 1bajA |
| Description: | HIV-1 CAPSID PROTEIN C-TERMINAL FRAGMENT PLUS GAG P2 DOMAIN |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.04588712677166 | bayes_pls_golite062009 |
| DNA binding | 2.53317408686316 | bayes_pls_golite062009 |
| nucleic acid binding | 2.33828046499668 | bayes_pls_golite062009 |
| binding | 2.07015157850093 | bayes_pls_golite062009 |
| transcription factor activity | 2.0090791129794 | bayes_pls_golite062009 |
| protein binding | 1.30905787243512 | bayes_pls_golite062009 |
| transcription activator activity | 0.68790059848359 | bayes_pls_golite062009 |
|
Region A: Residues: [87-156] |
1 11 21 31 41 51
| | | | | |
1 IVCHNCKGNG HISKDCPHVL CTTCGAIDDH ISVRCPWTKK CMNCGLLGHI AARCSEPRKR 60
61 GPRVCRTCHT
|
| Detection Method: | |
| Confidence: | 5.39794 |
| Match: | 1aafA |
| Description: | NUCLEOCAPSID ZINC FINGERS DETECTED IN RETROVIRUSES: EXAFS STUDIES ON INTACT VIRUSES AND THE SOLUTION-STATE STRUCTURE OF THE NUCLEOCAPSID PROTEIN FROM HIV-1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [157-214] |
1 11 21 31 41 51
| | | | | |
1 DTHTSSTCPL IWRYYVEKEH PVRIDVSEVR KFCYNCASDE HFGDDCTLPS RSNYPEST
|
| Detection Method: | |
| Confidence: | 2.22 |
| Match: | 2cqfA |
| Description: | Solution Structure of the Zinc-finger domain in LIN-28 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [215-313] |
1 11 21 31 41 51
| | | | | |
1 AFCEANCPSG NDASNKEFFE TRRKEFQLER REQNRNQKSS KQRPFHKPGN SLASRLGSKP 60
61 KSFKRKHSPP SEENGNLSFH SSDGRKFTKT SKKNRKRKW
|
| Detection Method: | |
| Confidence: | 4.69897 |
| Match: | 2c55A |
| Description: | Solution Structure of the Human Immunodeficiency Virus Type 1 p6 Protein |
Matching Structure (courtesy of the PDB): |
|
