| Protein: | SPCC550.15c |
| Organism: | Schizosaccharomyces pombe |
| Length: | 463 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC550.15c.
| Description | E-value | Query Range |
Subject Range |
|
|
425.0 | [0..2] | [371..2517] |
|
|
374.0 | [0..2] | [372..205] |
|
|
371.0 | [0..2] | [372..198] |
|
|
366.0 | [0..5] | [371..330] |
|
|
364.0 | [0..3] | [380..448] |
|
|
364.0 | [0..2] | [372..147] |
|
Region A: Residues: [1-142] |
1 11 21 31 41 51
| | | | | |
1 MSTSFACTTC TVAFNNAESQ KIHWKSDWHH YNLKRKVASL PPLSAEVFAG KILSIQKQNE 60
61 EVQKKAEFYQ NCEVCNKKFY SEGAYSSHMA SKKHRDNLSK FQRNSRIKKL QSEDASSIAS 120
121 STLSMGEPVV DSEIEEEEDL AS
|
| Detection Method: |  |
| Confidence: | 4.4 |
| Match: | 1zu1A |
| Description: | Solution Structure of the N-terminal Zinc Fingers of the Xenopus laevis double stranded RNA binding protein ZFa |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.11787660816151 | bayes_pls_golite062009 |
| RNA binding | 1.69160965456631 | bayes_pls_golite062009 |
| protein binding | 1.35089021956018 | bayes_pls_golite062009 |
| nucleic acid binding | 1.11154857147446 | bayes_pls_golite062009 |
| DNA binding | 0.941461311504448 | bayes_pls_golite062009 |
| transcription regulator activity | 0.725938680780418 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.354810987215404 | bayes_pls_golite062009 |
|
Region A: Residues: [143-362] |
1 11 21 31 41 51
| | | | | |
1 QLTSRAISLS NLSLHGRESE PSKTELATSI PQSNEASKSH LFTQEPTPEE IEAELARRSS 60
61 QRLSPRDCLF CAASFSSFDT CKKHMKASHS LYIPEREYLV DEPSLFDYLA EKISIGFTCL 120
121 TCNREFKSLE AVRAHMQQKG HTSIAYDTED EQLELSDFYD FTTSYPDYAV KQDETVVEED 180
181 GSSGEGDWED VSDDSDNSSL DSLEMGRVPI ADEYELHLPS
|
| Detection Method: | |
| Confidence: | 38.221849 |
| Match: | 2i13A |
| Description: | No description for 2i13A was found. |
|
Region A: Residues: [363-463] |
1 11 21 31 41 51
| | | | | |
1 GNRVGHRSLS RYFRQNLHSS STAVGDGASI HQNVARRAMS GNARAYRQAV ETSIAGVRDG 60
61 RKNYSASHIK SFQDQRRREE FANKMGIKNN TKKHFRDALL Q
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.411 | 0.328 | ribosomal large subunit biogenesis | a.1.1 | Globin-like |
| View | Download | 0.648 | 0.190 | ribosomal large subunit biogenesis | a.118.1 | ARM repeat |
| View | Download | 0.278 | 0.028 | ribosomal large subunit biogenesis | a.24.3 | Cytochromes |
| View | Download | 0.321 | 0.022 | ribosomal large subunit biogenesis | a.64.1 | Saposin |
| View | Download | 0.435 | 0.005 | ribosomal large subunit biogenesis | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
