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View Structure Prediction Details

Protein: SPCC794.04c
Organism: Schizosaccharomyces pombe
Length: 547 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC794.04c.

Description E-value Query
Range
Subject
Range
gi|49072098, gi|... - gi|71016129|ref|XP_758870.1| hypothetical protein UM02723.1 [Ustilago maydis 521], ref|XP_400338.1| ...
244.0 [0..19] [544..86]
gi|39944294, gi|... - gi|39944294|ref|XP_361684.1| hypothetical protein MGG_04158 [Magnaporthe grisea 70-15], gb|EAA50399....
239.0 [0..10] [547..44]
gi|70984531, gi|... - gi|70984531|ref|XP_747772.1| MFS multidrug transporter [Aspergillus fumigatus Af293], gi|66845399|gb...
gi|159122556 - gi|159122556|gb|EDP47677.1| MFS multidrug transporter, putative [Aspergillus fumigatus A1163]
235.0 [0..1] [544..61]
gi|42554903, gi|... - gi|46136363|ref|XP_389873.1| hypothetical protein FG09697.1 [Gibberella zeae PH-1], gi|42554903|gb|E...
231.0 [0..16] [547..35]
gi|49650092 - gi|49650092|emb|CAG79818.1| YALI0E21241p [Yarrowia lipolytica]
gi|49650092, gi|... - gi|50553624|ref|XP_504223.1| YALI0E21241p [Yarrowia lipolytica], gi|49650092|emb|CAG79818.1| unnamed...
226.0 [0..5] [540..27]
gi|125807904, gi... - gi|54635731|gb|EAL25134.1| GA15593-PA [Drosophila pseudoobscura], gi|125807904|ref|XP_001360559.1| G...
224.0 [0..2] [546..294]
CG30035-PA - This gene is referred to in FlyBase by the symbol Dmel\CG30035 (CG30035, FBgn0050035). It is a prote...
221.0 [0..6] [546..299]
gi|91078244 - gi|91078244|ref|XP_970364.1| PREDICTED: similar to CG10960-PB, isoform B [Tribolium castaneum]
218.0 [0..10] [545..592]
gi|88184223, gi|... - gi|88184223|gb|EAQ91691.1| hypothetical protein CHGG_03626 [Chaetomium globosum CBS 148.51], gi|1162...
217.0 [0..14] [491..93]

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Predicted Domain #1
Region A:
Residues: [1-84]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYIFLITGY KYRHLNLEAY NAKSRAIENE KRYLGNDRNL PFHREREKVE SNPNSSDEED  60
   61 LTSTNNTRSS DNTTSDTEDD SGED

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [85-547]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SYQVEWESGK DPLAPKNWPM WKKIYTLLVA SFIAIVITAN SSIFSDGGGI AAQQYHVGAT  60
   61 VGDLCSATFL LGFAAGSVLF APLSEVYGRL PLYSVTLVIF VVFQIGGGCS KNIWSLVIFR 120
  121 FFHGFFGCTP MSACGGTISD LFNPIQRTGA LLVFCAAAFV GPLVGPVMGG YITESKLGWR 180
  181 WDFWINMIWA GLTWVIVCFT MPETHSETLL DFKARYLRKK TNCDKWYNEH EHQRDPAYAI 240
  241 RTALTRGVRL LCTEPIVQAF CMYLVFINIL LYICMVGYPL IFYQYGFNAG EVGLAILGIL 300
  301 VGILLGLALT PIIYVHYRRR YEMRDGNICP EDRLFPLFFG SFFIPIALFW LGWTCYPSVH 360
  361 WAAPMVSGIF LGWGFLYVLA VCYSYLVDCY HEMAASALSV ATFTRYAAGG GMTIVARPMY 420
  421 NNLNYHWATS LLAFVGCGLV PIPFIFFFWG RRIRQRSPHA YKG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.522879
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transporter activity 4.09176719149278 bayes_pls_golite062009
substrate-specific transporter activity 3.59744164024479 bayes_pls_golite062009
transmembrane transporter activity 3.5865018981083 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 3.54194478414824 bayes_pls_golite062009
ion transmembrane transporter activity 2.21266150105753 bayes_pls_golite062009
cation transmembrane transporter activity 1.79369588808394 bayes_pls_golite062009
active transmembrane transporter activity 1.59419818573076 bayes_pls_golite062009
organic acid transmembrane transporter activity 1.24937104052238 bayes_pls_golite062009
secondary active transmembrane transporter activity 1.22264637452409 bayes_pls_golite062009
binding 1.01584233411372 bayes_pls_golite062009
alcohol transmembrane transporter activity 0.924836669821548 bayes_pls_golite062009
polyol transmembrane transporter activity 0.924836669821548 bayes_pls_golite062009
glycerol transmembrane transporter activity 0.812001619402678 bayes_pls_golite062009
symporter activity 0.74591237387473 bayes_pls_golite062009
solute:cation symporter activity 0.74591237387473 bayes_pls_golite062009
cation:sugar symporter activity 0.143419068761182 bayes_pls_golite062009
sugar:hydrogen symporter activity 0.143419068761182 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle